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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGACTTTTTGTGTATGACATTTTCTGGGTGTTCTTCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggctctttcctactgaacttggtctttgttaataccattttcagttagttccatatgcttcagctgatctcgctttgcttggttatgtacag

Basic information

species Zea mays
transcript GRMZM2G044348_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044348_T04 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA14G21190.1 (Glycine max), 5'ss of exon 3
GGTGGACTTTTTGTGTATGACATTTTCTGGGTGTTCTTCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggctctttcctactgaacttggtctttgttaataccattttcagtta----gttccatatgcttcagctgatctcgctttgcttggttatgtacag
| |||||| ||||| ||||||||||||||||| |||||||||||||| |||||||| || || ||||| || |||||||||||||||||       | ||    |   || ||  | |||  ||    | | |  ||||     |||  |||  |    | |       || |      |  |||  | 
GCTGGACTCTTTGTTTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttaaca--ttttaatgaaataattttatttttcctatcttcgtgtgaagtttaaatgtttaatactcccttgattgcgaaactgtagactttcttgtttaa

upper sequence: GRMZM2G044348_T04 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA06G08620.3 (Glycine max), 5'ss of exon 8
GGTGGACTTTTTGTGTATGACATTTTCTGGGTGTTCTTCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggctctttcctactgaacttgg--tctttgttaataccattttcagttagttccatatgcttcagctgatctcgctttgcttggttatgtacag------------------------------------
| ||| || ||||||||||||||||||||||| |||||||||||||| ||||| || || || ||||| || |||||||||||||||||     | | ||| ||| |||| | |   | | ||||  |     | | | ||       |||  ||    |||| ||   |        | |    |                                     
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttaa--gttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtatatttactatgatatcagataagaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcag

upper sequence: GRMZM2G044348_T04 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA04G08510.1 (Glycine max), 5'ss of exon 8
GGTGGACTTTTTGTGTATGACATTTTCTGGGTGTTCTTCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggctctttcctactgaacttgg--tctttgttaataccattttcagttagttccatatgcttcagctgatctcgctttgcttggttatgtacag-----------------------------------
| ||| || ||||||||||||||||||||||| |||||||| ||||| |||||||| || || ||||| || |||||||||||||||||  ||   | ||| ||| |||| | |   | | ||||  |     | | | ||       | | |||    |||| ||   |       |    || |                                    
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagt--ttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtgtacttactatgatatcagataaaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcag

upper sequence: GRMZM2G044348_T04 (Zea mays), 5'ss of exon 8
lower sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 7
GGTGGACTTTTTGTGTATGACATTTTCTGGGTGTTCTTCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggctctttcctactgaacttggtctttgttaataccattttcagttagttccat---atgcttcagctgatctcgctttgcttggttatgtacag
|  ||||| ||| | ||||| || |||||||| ||||| |||||||||||||| ||||| || ||||| |||||||||||||| |||||  ||     |  |  |   |       |  |   ||    ||| | | ||  |   |    ||  ||||| | |||||  | |      ||   | |||
GCAGGACTATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGgttagtaaaaatgcctcaa-aagtacacaccataccaaattgattctgatttgttcttagtcaatttttcag-taatctcattgttacatatttctttcag

upper sequence: GRMZM2G044348_T04 (Zea mays), 5'ss of exon 8
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 8
GGTGGACTTTTTGTGTATGACATTTTCTGGGTGTTCTTCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggctctttcctactgaact--tggtctttgttaataccattttcagtt------agttccatatgcttcagctgatc-------tcgctttgcttggttatgtacag----------------------------
|  ||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| || || || ||||||||||| || |||||| ||    |    | |||||  |  |  || | | || |    ||||  |||      | |||  | || |  |  | |||       |   ||| |||  ||||    |                             
GCAGGACTTTTTGTTTATGATATTTTCTGGGTCTTCTTCACTCCAGTGATGGTCAGTGTTGCAAAGTCCTTCGATGCTCCTATTAAGgtcagttatccaggtcaactgagatattaatcctggatattctggtttttggttcaatttatttcgctctgttgtaattaatcattaagtttaatttactttattattctaaatgtaataacagttcaattctttttgcag

upper sequence: GRMZM2G044348_T04 (Zea mays), 5'ss of exon 8
lower sequence: PP1S47_5V6.2 (Physcomitrella patens), 5'ss of exon 8
GGTGGACTTTTTGTGTATGACATTTTCTGGGTGTTCTTCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgt-cggtggctctttcctact-----gaacttggtctttgttaataccattttcagttagttccatatg-cttcagctgatctcgctttgcttggttatgtacag
|  ||||| ||  | || ||||| ||||||||||||||||| || || ||||| || ||||| || || ||||||||||| || ||||| |   | | |||  ||  |     |    ||||   ||  ||  |  | ||  |  ||  | |  || |  ||   ||    |   || || || |  |    
GCAGGACTGTTCATATACGACATCTTCTGGGTGTTCTTCACGCCTGTAATGGTGAGCGTGGCAAAGTCGTTCGATGCTCCCATCAAGgtactaagccccttatctgtttcttcgtggatggtgcatggcaa-gctgtgttatgagagagctacttgacaacaatggaatgagacatgtttcgtgagct----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149027787|gb|EE154597.2|EE154597
EST:     TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAG                         CTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
genomic: TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggct ... ttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
EST: gi|94475589|gb|EB704547.1|EB704547
EST:     TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAG                         CTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
genomic: TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggct ... ttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
EST: gi|7137682|gb|AW499217.1|AW499217
EST:     TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAG                         CTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
genomic: TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggct ... ttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
EST: gi|67018214|gb|CO446963.1|CO446963
EST:     TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAG                         CTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
genomic: TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggct ... ttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
EST: gi|148944600|gb|EC889730.2|EC889730
EST:     TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAG                         CTTCTGTTTCCAACTG
genomic: TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggct ... ttatgtacagCTTCTGTTTCCAACTG
EST: gi|149100816|gb|EE186910.2|EE186910
EST:     TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAG                         CTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
genomic: TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggct ... ttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
EST: gi|148943972|gb|EC889053.2|EC889053
EST:     TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAG                         CTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
genomic: TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggct ... ttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
EST: gi|71426478|gb|DR807528.1|DR807528
EST:     TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAG                         CTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
genomic: TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggct ... ttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT