1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGGGAGCATCATCAGCAATGCGGCTTCATCCCTCTTCCCCCCGCCTGCATCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAGgtagaaacccagccacttctcttcagtccttttttttttcaatacaagagcagagtcgtttggtagtaagaagctgtttgtctttcatcag
species | Zea mays |
transcript | GRMZM2G044004_T03 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAG GTTTTCTCCTGGGCATGAAGCCATTGGGCTGEST: gi|211185320|gb|FL304174.1|FL304174
genomic: TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAGgtagaaaccc ... ctttcatcagGTTTTCTCCTGGGCATGAAGCCATTGGGCTG
EST: TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAG GTTTTCTCCTGGGCATGAAGCCATTGGGCTGTGAATACAGAGCAAGGGGAGEST: gi|4681019|gb|AI629689.1|AI629689
genomic: TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAGgtagaaaccc ... ctttcatcagGTTTTCTCCTGGGCATGAAGCCATTGGGCTGTGAATACAGAACAAGGGGAG
EST: TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAG GTTTTCTCCTGGGCATGAAGCCATTGGGCTGTGAATACAGAACAAGGGGAGEST: gi|211185319|gb|FL304173.1|FL304173
genomic: TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAGgtagaaaccc ... ctttcatcagGTTTTCTCCTGGGCATGAAGCCATTGGGCTGTGAATACAGAACAAGGGGAG
EST: TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAG GTTTTCTCCTGGGCATGAAGCCATTGGGCTGTGAEST: gi|211185321|gb|FL304175.1|FL304175
genomic: TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAGgtagaaaccc ... ctttcatcagGTTTTCTCCTGGGCATGAAGCCATTGGGCTGTGA
EST: TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAG GTTTTCTCCTGGGCATGAAGCCATTGGG-TGTGAA
genomic: TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAGgtagaaaccc ... ctttcatcagGTTTTCTCCTGGGCATGAAGCCATTGGGCTGTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGGAGCATCATCAGCAATGCGGCTTCATCCCTCTTCCCCCCGCCTGCATCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAGgtagaaacccagccacttctcttcagtccttttttttttcaatacaagagcagagtcgtttggtagtaagaagctgtttgtctttcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC