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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGATAACACGGATGCGGAGGGGAGGCTTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccatttagaccgtactgagcagtgtatactgcaatttttatagagtgggatttgaaatatgataggccgctggaaatatgatgaattcgttctcta...

Basic information

species Zea mays
transcript GRMZM2G043893_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043893_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g24650.1 (Oryza sativa), 5'ss of exon 7
GTAGATAACACGGATGCGGAGGGGAGGCTTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccatttagaccgtactgagcagtgtatactgcaatttttatagagtgggatttgaaatatgataggccgctggaaatatg-atgaattcgttctcta-----
|| || ||||| ||||| || || ||||||||||| ||||| |||||||| ||||| ||||| |  ||||||||||||||||  | |||      |   ||  |    |  | | |||  ||| || ||  || ||  |  |   |      || |||| || ||       | || |      
GTGGACAACACTGATGCAGAAGGAAGGCTTACACTTGCTGATGCTTTGGTATATGCCTGTAAACTGGGTGTTGACAAGgtaatgagttaattttga--aagttgctcgtgtt-ctattgatat-gactgccatctgtgaagttccatatt--tgaaaatttgtataggacattgctattgttgg

upper sequence: GRMZM2G043893_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA02G36530.1 (Glycine max), 5'ss of exon 7
GTAGATAACACGGATGCGGAGGGGAGGCTTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccatttagaccgtactgagcagtgtatactgcaatttttatagagtg-----ggatttgaaatatgataggccgctggaaatatgatgaattcgttctcta
||  | ||||| ||||| || || || ||||| ||||| || ||| |||| ||||||||||||||||||||||| ||||||    | || || |   ||     | | |  | | ||   | ||   |        ||    || |   |||||| |     |    |   ||| | |     
GTTAACAACACTGATGCTGAAGGTAGACTTACCCTGGCAGATGCTCTGGTATATGCTTGTAACCAAGGTGTTGAAAAGgtataactgtatacagctatgcatt-tatttctttctatacctgtaatatccccataaatcatcaaaactctaggcctccc---acccaaaagatttgcttagc-

upper sequence: GRMZM2G043893_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA17G08150.1 (Glycine max), 5'ss of exon 7
GTAGATAACACGGATGCGGAGGGGAGGCTTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccatttagaccgtactgagcagtgtatactgc----aatttttatagagtgggatttgaaatatgataggcc-gctggaaatatgatgaattcgttctcta
||  | ||||| ||||| || || || ||||| ||||| || ||| |||| ||||||||||| ||||||||||| ||||||     |||  | |   ||     | |  |        |||  | | ||     | | |        | ||    |||    || | |  | ||  ||     
GTTAACAACACTGATGCTGAAGGTAGACTTACCCTGGCAGATGCTCTGGTATATGCTTGTAATCAAGGTGTTGAAAAGgtataacattacgcagccatgcattctttccatccttataaatcataaaagctccaggtctccctcccaaaagatttgcttagcatttaa-aattttattt----

upper sequence: GRMZM2G043893_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA16G19350.1 (Glycine max), 5'ss of exon 7
GTAGATAACACGGATGCGGAGGGGAGGCTTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccatttagaccgtactgagcagtgtatactgc----aatttttatagagtgggatttgaaatatgataggcc-gctggaaatatgatgaattcgttctcta
||  | ||||| ||||| || || || ||||| ||||| || ||| |||| ||||||||||| ||||||||||| ||||||     |||  | |   ||     | |  |        |||  | | ||     | | |        | ||    |||    || | |  | ||  ||     
GTTAACAACACTGATGCTGAAGGTAGACTTACCCTGGCAGATGCTCTGGTATATGCTTGTAATCAAGGTGTTGAAAAGgtataacattacgcagctatgcattctttccatccttataaatcataaaagctccaggtctccctcccaaaagatttgcttagcatttaa-aattttattt----

upper sequence: GRMZM2G043893_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA19G22730.1 (Glycine max), 5'ss of exon 7
GTAGATAACACGGATGCGGAGGGGAGGCTTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgta-accatttagaccgta---ctgagcagtgtatactgcaatttttatagagtgggatttgaaatatgataggccgctggaaatatgatgaattcgttctcta
||  ||||||| ||||| ||||| |||||||| ||||| || ||| |||| |||||||||||||| |||| ||| ||||||  |   |  ||   |    ||    | | | |||   |||  | || | | ||  | |    | | |     | ||   | |    |  | |    | |||
GTTAATAACACAGATGCAGAGGGTAGGCTTACCCTGGCAGATGCTCTGGTGTATGCTTGTAACCAGGGTGCTGAAAAGgtatgctgctatgaatctgaatctttctaatatttacataaatcataattgtgaggtgtatactctttaagttaactctaccagt----tagagttaaccccta

upper sequence: GRMZM2G043893_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 7
GTAGATAACACGGATGCGGAGGGGAGGCTTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccatttagaccgtactgagcagtgtatactgcaatttttatagagtgggatttgaaatatgataggc----cgctggaaatatgatgaattcgttctcta
||  ||||||| ||||| ||||| || || ||||| || ||||||||||| |||||||||||||||||||| || |||||| |||  |  |  |  || |    |   |   |   ||||| |      | | ||||| | || |  |     |  ||   |  | |  | |    ||| | 
GTCAATAACACAGATGCAGAGGGCAGACTCACACTTGCAGACGCTTTGGTATATGCTTGTAACCAAGGTGTAGAGAAGgta-ccaccttaaaagagctaa--tattcctgtagatttttttttctcagagaaattgaattttgtttcgtttttcattgatcaactaagtactagactcttt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89247433|gb|DY619219.1|DY619219
EST:     TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAG                         ATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
genomic: TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccattt ... tggtatgcagATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
EST: gi|101393107|gb|EB818484.1|EB818484
EST:     TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAG                         ATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
genomic: TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccattt ... tggtatgcagATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
EST: gi|148958192|gb|EC904397.2|EC904397
EST:     TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAG                         ATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
genomic: TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccattt ... tggtatgcagATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
EST: gi|148991871|gb|EE033465.2|EE033465
EST:     TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAG                         ATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
genomic: TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccattt ... tggtatgcagATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
EST: gi|149001041|gb|EE038290.2|EE038290
EST:     TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAG                         ATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
genomic: TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccattt ... tggtatgcagATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
EST: gi|71774294|gb|DR972172.1|DR972172
EST:     TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAG                         ATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
genomic: TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccattt ... tggtatgcagATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
EST: gi|149076392|gb|EE165010.2|EE165010
EST:     TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAG                         ATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
genomic: TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccattt ... tggtatgcagATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
EST: gi|71758309|gb|DR956246.1|DR956246
EST:     TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAG                         ATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
genomic: TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccattt ... tggtatgcagATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
EST: gi|76913694|gb|DV165227.1|DV165227
EST:     TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAG                         ATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
genomic: TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccattt ... tggtatgcagATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
EST: gi|89252259|gb|DY624045.1|DY624045
EST:     TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAG                         ATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
genomic: TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccattt ... tggtatgcagATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
EST: gi|71318207|gb|DR795866.1|DR795866
EST:     TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAG                         ATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
genomic: TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccattt ... tggtatgcagATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
EST: gi|74236861|gb|DT644775.1|DT644775
EST:     TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAG                         ATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC
genomic: TTACACTGGCTGACGCTTTGGTCTATGCTTGTAACCAAGGTGTTGACAAGgtaaccattt ... tggtatgcagATTATTGATCTGGCGACGTTAACGGGTGCTATTCGTGTCGCGCTTGGGCCC