1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCATTATTTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAGgtaatggttttgcatgcattcaaaaactgactattgtaaggaagatatttgcgattgaggcggtggtccaactcctcgccttaccaccttaagaacactggtttgctactttccagaattgaacaaagattaactttttgcag
species | Zea mays |
transcript | GRMZM2G043350_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CATTATTTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAG GTTTTGGGCACCCCAACACGAGAGGAAATTCGTTGTATGAATCCCAACTATEST: gi|71759011|gb|DR956948.1|DR956948
genomic: CATTATTTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAGgtaatggttt ... ctttttgcagGTTTTGGGCACCCCAACACGAGAGGAAATTCGTTGTATGAATCCCAACTAT
EST: CATTATTTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAG GTTTTGGGCACCCCAACACGAGAGGAAATTCGTTGTATGAATCCCAACTATEST: gi|211363839|gb|FL067525.1|FL067525
genomic: CATTATTTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAGgtaatggttt ... ctttttgcagGTTTTGGGCACCCCAACACGAGAGGAAATTCGTTGTATGAATCCCAACTAT
EST: CATTATTTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAG GTTTTGGGCACCC-AACACGAGAGGAAATTCGTTGTATGAATCCCAACTATEST: gi|71446525|gb|DR827575.1|DR827575
genomic: CATTATTTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAGgtaatggttt ... ctttttgcagGTTTTGGGCACCCCAACACGAGAGGAAATTCGTTGTATGAATCCCAACTAT
EST: TTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAG GTTTTGGGCACCCCAACACGAGAGGAAATTCGTTGTATGAATCCCAACTATEST: gi|78092424|gb|DV520798.1|DV520798
genomic: TTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAGgtaatggttt ... ctttttgcagGTTTTGGGCACCCCAACACGAGAGGAAATTCGTTGTATGAATCCCAACTAT
EST: CATTATTTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAG GTTTTGGGCACCCCAACACGAGAGGAAATTCGTTGTATGAATCCCAACTATEST: gi|60338451|gb|DN205424.1|DN205424
genomic: CATTATTTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAGgtaatggttt ... ctttttgcagGTTTTGGGCACCCCAACACGAGAGGAAATTCGTTGTATGAATCCCAACTAT
EST: GGACCAGCTGGTTGAGATTATCAAG GTTTTGGGCACCCCAACACGAGAGGAAATTCGTTGTATGAATCCCAACTAT
genomic: GGACCAGCTGGTTGAGATTATCAAGgtaatggttt ... ctttttgcagGTTTTGGGCACCCCAACACGAGAGGAAATTCGTTGTATGAATCCCAACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATTATTTCCTGGGGAAAGTGCTGTGGACCAGCTGGTTGAGATTATCAAGgtaatggttttgcatgcattcaaaaactgactattgtaaggaagatatttgcgattgaggcggtggtccaactcctcgccttaccaccttaagaacactggtttgctactttccagaattgaacaaagattaactttttgcag
- - - - - - - - - - - - - - - CAGCTG