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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAGTTCTAGCTCCATATTCTGCAGAAGATGCTCGAGGTTTGCTGAAAGCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatgtctttctgtgctcaactatattctctatgttgtttgtttgaattgacatctcattatataatgcattttcctgcag

Basic information

species Zea mays
transcript GRMZM2G043198_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043198_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os08g42410.2 (Oryza sativa), 5'ss of exon 6
TGAAAGTTCTAGCTCCATATTCTGCAGAAGATGCTCGAGGTTTGCTGAAAGCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatgtctttctgtgctcaactatattctctatgttgtttgtttgaattgacatctcattatataatgcattttcctgcag
|||| || ||| |||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||| ||| | ||||||||||| |||||||  | | |||||  | | ||| |||||||||||  ||       ||| ||| ||| ||| |  ||| || ||||  ||||||
TGAAGGTCCTAACTCCTTATTCTGCAGAAGATGCTCGGGGCTTGCTAAAAGCAGCAATCAGGGATCCAGACCCTGTTGTTTTCTTGGAAAATGAACTGCTgtatgcta-gcctttcctt-cccaattatattctctaaatt-------tgatttgccatttcactgaatagtgtattt--ctgcag

upper sequence: GRMZM2G043198_T03 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA14G02380.2 (Glycine max), 5'ss of exon 8
TGAAAGTTCTAGCTCCATATTCTGCAGAAGATGCTCGAGGTTTGCTGAAAGCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatgtctttctgtgctc-------aactatattctctatgttgtttg-tttgaattgacatctcattatataatgcattttcctgcag---------------------------------------------
|||||||  |  | ||||||||  | ||||||||||| |||||||| ||||| || || ||||| || ||||||||||| ||||||||||||||| |  |||| |   ||    |   | |||       ||  |       | || || ||| |||| |     |  | | |    |  |  |||  |  |||                                             
TGAAAGTCTTGTCACCATATTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCTGCTATAAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTgtaagttgtgctgcttgattctcccaccccaaaaaagacacttgtgctgcttgatttgtacatgaaaatgagtggtcatagattttgacatcagttcttgtttcaaaaaatatttaatttgatggattatgtcctctag

upper sequence: GRMZM2G043198_T03 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA02G46380.2 (Glycine max), 5'ss of exon 8
TGAAAGTTCTAGCTCCATATTCTGCAGAAGATGCTCGAGGTTTGCTGAAAGCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg--------tctttctgtgctcaactatattctctatgttgtttg-tttgaattgacatctcattatataatgcattttcctgcag---------------------------------------------
|||||||  |  | ||||||||  | ||||||||||| |||||||| ||||| || || ||||| || ||||||||||| ||||||||||||||| |  |||| |   ||        |  | | |  |  ||  | | ||| | || || ||| |||| |     |  | | ||   |  |  |||  |  |||                                             
TGAAAGTCTTGTCACCATATTCATCTGAAGATGCTCGTGGTTTGCTTAAAGCTGCTATAAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTgtaagttgtgctgcttgattctcccgccccaaaaaagactcttt-tgctgcttgatttgtacatgaaaatgagtagtcatagattttggcatcagttcttgtttcaaaaaatatttaatttgatgaattatgtcctctag

upper sequence: GRMZM2G043198_T03 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA14G36540.3 (Glycine max), 5'ss of exon 8
TGAAAGTTCTAGCTCCATATTCTGCAGAAGATGCTCGAGGTTTGCTGAAAGCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatgt--ctttctgtgctcaactatattctctatgttgtttgtttgaattgacatctcattatataatgcattttcctgcag----------------
|||||||  |  | ||||||||  | |||||||| || |||||||| ||||| || || ||||| || ||||||||||| ||||||||||||||| |  |||| |   ||   |||  | || |||   | ||      |  |   | |||||  | |  |||  ||  | |||  ||||   | ||                 
TGAAAGTCTTGTCACCATATTCATCTGAAGATGCCCGTGGTTTGCTTAAAGCTGCTATTAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAATTGTTgtaagttgtgctgcttggtttgttcatgaaaatgagtagtcatagat-tttgacatcagttcttgtttcaaaatatatttaatttcatgaattatgtcctctag

upper sequence: GRMZM2G043198_T03 (Zea mays), 5'ss of exon 8
lower sequence: EFJ19158 (Selaginella moellendorffii), 5'ss of exon 6
TGAAAGTTCTAGCTCCATATTCTGCAGAAGATGCTCGAGGTTTGCTGAAAGCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatgtctttctgtgctcaactatattctctatgttgtttgtttgaattgacatctcattatataatgcattttcctgcag
| |||||  |  ||||||| || || |||||||| |||||  |  |||||||||||||||||||||| |||||||| |||||  | ||||| ||  | ||||| |        | |    |  |  | | |  | ||  ||  || |||| |                                  
TAAAAGTCGTGACTCCATACTCGGCGGAAGATGCACGAGGCCTTTTGAAAGCAGCAATCAGGGATCCCGATCCTGTCGTGTTTTTGGAAAACGAGTTGCTgtaagtggaacaatgcaactcggacttgtctcatatagttttattttttgtag---------------------------------

upper sequence: GRMZM2G043198_T03 (Zea mays), 5'ss of exon 8
lower sequence: EFJ13549 (Selaginella moellendorffii), 5'ss of exon 7
TGAAAGTTCTAGCTCCATATTCTGCAGAAGATGCTCGAGGTTTGCTGAAAGCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatgtctttctgtgctcaactatattctctatgttgtttgtttgaattgacatctcattatataatgcattttcctgcag
| |||||  |  ||||||| || || |||||||| |||||  |  |||||||||||||||||||||| ||||||||||||||  | ||||| ||  | ||||| |        | |    |  |  | | |  | || ||| | | |||| |                                  
TAAAAGTCGTGACTCCATACTCGGCGGAAGATGCACGAGGCCTTTTGAAAGCAGCAATCAGGGATCCCGATCCTGTTGTGTTTTTGGAAAACGAGTTGCTgtaagtggaacaatgcaactcggacttgtctcatata-gttttatttttgtag---------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31356807|gb|CD441164.1|CD441164
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|32801932|gb|CD954168.1|CD954168
EST:     TGTGTTCC-TGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: TGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|32788226|gb|CD940462.1|CD940462
EST:     GATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|76282095|gb|DV021663.1|DV021663
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|67038743|gb|CO464998.1|CO464998
EST:     GGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|60396979|gb|DN229798.1|DN229798
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|32801690|gb|CD953926.1|CD953926
EST:     GATCCCGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|6031329|gb|AW076186.1|AW076186
EST:     AAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: AAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|32802072|gb|CD954308.1|CD954308
EST:     GATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG