1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGGTCAAACAAAGGATGCAAACTGGTCAATTCAAGTCTGCACCTGATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCTgtatgtgtattctggcatcttatttggttaacaatctttatattgacttctgtttgaaggatgaattactgatttactgttgatctgaggtgtaaattttgttcctattttaaatatatcttgtgataatatccattatatcaccggtttcttttggtttgtag
species | Zea mays |
transcript | GRMZM2G042027_T05 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCT GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTEST: gi|113702185|gb|EE679689.1|EE679689
genomic: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCTgtatgtgtat ... tggtttgtagGGTTATGGTTCCTTTCTACTTCGAGATCTACCATTT
EST: AAGGACTGTACGCT GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTCEST: gi|91056577|gb|EB166995.1|EB166995
genomic: AAGGACTGTACGCTgtatgtgtat ... tggtttgtagGGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTC
EST: ATGCTGTTCGTTTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCT GGTTATGGTTCCTTTCTACTTCGAGATTTACCATTTGATGCCATCCAGTTCEST: gi|71302083|gb|DR787129.1|DR787129
genomic: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCTgtatgtgtat ... tggtttgtagGGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTC
EST: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCT GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTCEST: gi|76011416|gb|DT938586.1|DT938586
genomic: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCTgtatgtgtat ... tggtttgtagGGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTC
EST: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCT GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTCEST: gi|16918359|gb|BM073712.1|BM073712
genomic: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCTgtatgtgtat ... tggtttgtagGGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTC
EST: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCT GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTCEST: gi|78092776|gb|DV521150.1|DV521150
genomic: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCTgtatgtgtat ... tggtttgtagGGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTC
EST: TAAAGGACTGTACGCT GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTCEST: gi|211226520|gb|FL435621.1|FL435621
genomic: TAAAGGACTGTACGCTgtatgtgtat ... tggtttgtagGGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTC
EST: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCT GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTCEST: gi|33092443|gb|CF052437.1|CF052437
genomic: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCTgtatgtgtat ... tggtttgtagGGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTC
EST: GCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCT GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTCEST: gi|50325364|gb|CO520490.1|CO520490
genomic: GCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCTgtatgtgtat ... tggtttgtagGGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTC
EST: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCT GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTCEST: gi|60342707|gb|DN209680.1|DN209680
genomic: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCTgtatgtgtat ... tggtttgtagGGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTC
EST: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCT GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTCEST: gi|91054196|gb|EB164614.1|EB164614
genomic: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCTgtatgtgtat ... tggtttgtagGGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTC
EST: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCT GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTCEST: gi|67018887|gb|CO447636.1|CO447636
genomic: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCTgtatgtgtat ... tggtttgtagGGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTC
EST: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCT GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTCEST: gi|78083391|gb|DV511784.1|DV511784
genomic: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCTgtatgtgtat ... tggtttgtagGGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTC
EST: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCT GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTC
genomic: ATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCTgtatgtgtat ... tggtttgtagGGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTCAAACAAAGGATGCAAACTGGTCAATTCAAGTCTGCACCTGATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCTgtatgtgtattctggcatcttatttggttaacaatctttatattgacttctgtttgaaggatgaattactgatttactgttgatctgaggtgtaaattttgttcctattttaaatatatcttgtgataatatccattatatcaccggtttcttttggtttgtag
- - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG