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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGCAAATGCATTTAATTGCACCACTGGACAAACAATTCTCCAACCTATATGGTCTTCTAACTGATCATATTTCTGAAAATGTTGACTACAAGgtaaaattcaattgctattgtaatctttgcattttcttttgtatacatgttttatgtatcaacaatgattgaggcaacaaatgcag

Basic information

species Zea mays
transcript GRMZM2G041732_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G041732_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g33520.1 (Oryza sativa), 5'ss of exon 7
GTGAAGCAAATGCATTTAATTGCACCACTGGACAAACAATTCTCCAACCTATATGGTCTTCTAACTGATCATATTTCTGAAAATGTTGACTACAAGgtaaaattcaattgctattgtaatctttgcattttcttttgtatacatgttttatgtatcaacaatgattgaggcaacaaatgcag
||||||||||||||| || |||||||||| |||||||| || || | ||| |||||||||||||||||||||||||| ||||||||||||||||||||||   | |||||  ||       |||  | | |||  |||| | |||      |||   |||||||        | ||||||||
GTGAAGCAAATGCATGTAGTTGCACCACTAGACAAACAGTTTTCTATCCTGTATGGTCTTCTAACTGATCATATTTCAGAAAATGTTGACTACAAGgtaag--tgaattggcata------ttttaagtgtctcctgtaaatatgc-----gtacttacaatga-------gaaaaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211278717|gb|FL386602.1|FL386602
EST:     ACCTATATGGTCTTCTAACTGATCATATTTCTGAAAATGTTGACTACAAG                         GTGATTGTATTCTGTACAACAGCAAAAGTAACAAGCCTTGTTGCTGAGCTT
genomic: ACCTATATGGTCTTCTAACTGATCATATTTCTGAAAATGTTGACTACAAGgtaaaattca ... acaaatgcagGTGATTGTATTCTGTACAACAGCAAAAGTAACAAGCCTTGTTGCTGAGCTT
EST: gi|211084951|gb|FL398639.1|FL398639
EST:     ACCTATATGGTCTTCTAACTGATCATATTTCTGAAAATGTTGACTACAAG                         GTGATTGTATTCTGTACAACAGCAAAAGTAACAAGCCTTGTTGCTGAGCTT
genomic: ACCTATATGGTCTTCTAACTGATCATATTTCTGAAAATGTTGACTACAAGgtaaaattca ... acaaatgcagGTGATTGTATTCTGTACAACAGCAAAAGTAACAAGCCTTGTTGCTGAGCTT
EST: gi|32943805|gb|CF048624.1|CF048624
EST:     ACCTATATGGTCTTCTAACTGATCATATTTCTGAAAATGTTGACTACAAG                         GTGATTGTATTCTGTAC
genomic: ACCTATATGGTCTTCTAACTGATCATATTTCTGAAAATGTTGACTACAAGgtaaaattca ... acaaatgcagGTGATTGTATTCTGTAC