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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTGGTCATAGTCGACTCAAAAGACATGCGGACACTTGTAACAGTTAAAAAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAGgttagtatctttaacttcgagttgacaaatctaaagggaaaaaaaatgcaatttctcaatgtagttgctctacatcatcccag

Basic information

species Zea mays
transcript GRMZM2G041642_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G041642_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g39650.1 (Oryza sativa), 5'ss of exon 8
GCGTGGTCATAGTCGACTCAAAAGACATGCGGACACTTGTAACAGTTAAAAAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAGgttagtatcttt-------aacttcgagttgac--aaatctaaagggaaaaaaaatgcaatttctcaatgtagttgctctacatcatcccag
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GCATTATTGTACTAAGTTCAAAAAATATGCGGTCGCTTGTAACAGTTAAAAAGGCACATCTTGGCATTATTACTACATTGGCATTCTCTCAAGATTCAAGgtcagtatatatgccgtagactctcgatctgcttggagtttacaaacgtgacagatgtgatttctcaatgttggtattctattttatatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78021609|gb|DV489996.1|DV489996
EST:     AAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTTGACTCTACTGCAAGGGTGACGTACGTTGG
genomic: AAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAGgttagtatct ... atcatcccagAACATTGCTGTCAACTTCCTTTGACTCTACTGCAAGGGTGACGTACGTTGG
EST: gi|24769540|gb|CA404669.1|CA404669
EST:     AAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTTGACTCTACTGCAAGGGTGACGTACGTTGG
genomic: AAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAGgttagtatct ... atcatcccagAACATTGCTGTCAACTTCCTTTGACTCTACTGCAAGGGTGACGTACGTTGG
EST: gi|5895643|gb|AW036889.1|AW036889
EST:     AAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTTGACTCTACTGCAAGGGTGACGTACGTTGG
genomic: AAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAGgttagtatct ... atcatcccagAACATTGCTGTCAACTTCCTTTGACTCTACTGCAAGGGTGACGTACGTTGG
EST: gi|5791284|gb|AI978076.1|AI978076
EST:     AAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTTGACTCTACTGCAAGGGTGACGTACGTTGG
genomic: AAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAGgttagtatct ... atcatcccagAACATTGCTGTCAACTTCCTTTGACTCTACTGCAAGGGTGACGTACGTTGG
EST: gi|71759938|gb|DR957875.1|DR957875
EST:     AAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTTGACTTTACTGCAAGGGTGACGTACGTTGG
genomic: AAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAGgttagtatct ... atcatcccagAACATTGCTGTCAACTTCCTTTGACTCTACTGCAAGGGTGACGTACGTTGG
EST: gi|211490136|gb|FL479271.1|FL479271
EST:     AAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTTGACTCTACTGCAAGGGTGACGTACGTTGG
genomic: AAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAGgttagtatct ... atcatcccagAACATTGCTGTCAACTTCCTTTGACTCTACTGCAAGGGTGACGTACGTTGG
EST: gi|6194538|gb|AW146642.1|AW146642
EST:     AAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTTGACTCTACTGCAAGGGTGACGTACGTTGG
genomic: AAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAGgttagtatct ... atcatcccagAACATTGCTGTCAACTTCCTTTGACTCTACTGCAAGGGTGACGTACGTTGG
EST: gi|5608300|gb|AI902072.1|AI902072
EST:     AAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAG                         AACATTGCTGTCAACTTCCTTTGNCTCTACTGCAAGGGTGACGTACGTTGG
genomic: AAGGCCCATCTTGGTGTTGTGACTACACTGTCCTTCTCTCAGGATTCAAGgttagtatct ... atcatcccagAACATTGCTGTCAACTTCCTTTGACTCTACTGCAAGGGTGACGTACGTTGG