Sequence
atgc intronic sequence ATGC exonic sequenceGTATTGATCTGCGTGGTATCTGTATACTGATGGTAGACGAGAAAATGGAACCTTCAACTGCCAAAATGATGCTGAAAGGAAGTGCAGATAGTTTGAACAGgtcagtacatgtcatcctggcttttatggctcatttaaaactagaagctttaacgtacttaatacaatttggttgagtggtctgcatgaaaaaaaaatct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G040995_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g18140.1 (Oryza sativa), 5'ss of exon 7
GTATTGATCTGCGTGGTATCTGTATACTGATGGTAGACGAGAAAATGGAACCTTCAACTGCCAAAATGATGCTGAAAGGAAGTGCAGATAGTTTGAACAGgtcagta-catgtcatcctggcttttatggctcatttaaaactagaagctttaacgtacttaatacaatttggttgagtggtctgcatgaaaaaaaaatct-
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GTATTGATCAGCGTGGTATCTGTATATTGATGGTAGATGAGAAAATGGAACCTTCAACTGCCAAAATGATTCTGAAAGGAAGTGCTGATAGTTTGAACAGgtaagtgtcctggattcactgcttatacttagcattttagcctggatgaat-ggtgttaatgagaaaacctgggc-attggactgaaactatctgatctatt
upper sequence: GRMZM2G040995_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 7
GTATTGATCTGCGTGGTATCTGTATACTGATGGTAGACGAGAAAATGGAACCTTCAACTGCCAAAATGATGCTGAAAGGAAGTGCAGATAGTTTGAACAGgtcagtacatgtcatcctggcttttatggctcatttaaaactagaagctttaacgtacttaatacaat-ttggttgagtggtc--tgcatgaaaaaaaaatct
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GCATTGATGAACGGGGAATATGCATCCTTATGGTGGATGAGAAGCTAGAACCTTCTACTGCTAAAATGATGCTCAAAGGAAGTGCTGATTGCTTGAACAGgt-actggtttcagttgccccttcggtattgcttttgatgcagaataaatt--cttatttggggccaccttttttgcatacttattgctggaatttaaggggcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211040728|gb|FL448007.1|FL448007EST: CCTTCAACTGCCAAAATGATGCTGAAAGGAAGTGCAGATAGTTTGAACAG TGCCTTTCATCTGAGCTACAATATGCTGTTAAATCAAATGCGATCTGAGGA
genomic: CCTTCAACTGCCAAAATGATGCTGAAAGGAAGTGCAGATAGTTTGAACAGgtcagtacat ... tatttgttagTGCCTTTCATCTGAGCTACAATATGCTGTTAAATCAAATGCGATCTGAGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATTGATCTGCGTGGTATCTGTATACTGATGGTAGACGAGAAAATGGAACCTTCAACTGCCAAAATGATGCTGAAAGGAAGTGCAGATAGTTTGAACAGgtcagtacatgtcatcctggcttttatggctcatttaaaactagaagctttaacgtacttaatacaatttggttgagtggtctgcatgaaaaaaaaatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT