1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGAAGAAGCTGAGATTGGCATGTGGGAGGCAGTAACATGGCTTGCGGTTTTAACACTCTGGGTGTCTTTTCTTTCTGAGTACCTAGTTAACGCCATTGAGgtattcttcttctccaattcaacaagaaagaataaaaagtcagcttttattcatctgtagcaagtggaacttgttaaaggtagcttcctacagttgacag...
species | Zea mays |
transcript | GRMZM2G040017_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TAACACTCTGGGTGTCTTTTCTTTCTGAGTACCTAGTTAACGCCATTGAG GGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTGEST: gi|211010290|gb|FL457993.1|FL457993
genomic: TAACACTCTGGGTGTCTTTTCTTTCTGAGTACCTAGTTAACGCCATTGAGgtattcttct ... ttgctgttagGGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTG
EST: TTTTCTTTCTGAGTACCTAGTTAACGCCATTGAG GGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTCTGEST: gi|91868897|gb|EB400200.1|EB400200
genomic: TTTTCTTTCTGAGTACCTAGTTAACGCCATTGAGgtattcttct ... ttgctgttagGGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTG
EST: TAACACTCTGGGTGTCTTTTCTTTCTGAGTACCTAGTTAACGCCATTGAG GGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTGEST: gi|32837305|gb|CD976983.1|CD976983
genomic: TAACACTCTGGGTGTCTTTTCTTTCTGAGTACCTAGTTAACGCCATTGAGgtattcttct ... ttgctgttagGGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTG
EST: TACCTAGTTAACGCCATTGAG GGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTCTGEST: gi|60339318|gb|DN206291.1|DN206291
genomic: TACCTAGTTAACGCCATTGAGgtattcttct ... ttgctgttagGGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTG
EST: TAACACTCTGGGTGTCTTTTCTTTCTGAGTACCTAGTTAACGCCATTGAG GGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTGEST: gi|32836604|gb|CD976282.1|CD976282
genomic: TAACACTCTGGGTGTCTTTTCTTTCTGAGTACCTAGTTAACGCCATTGAGgtattcttct ... ttgctgttagGGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTG
EST: GTACCTAGTTAACGCCATTGAG GGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTCTGEST: gi|148972711|gb|EE023671.2|EE023671
genomic: GTACCTAGTTAACGCCATTGAGgtattcttct ... ttgctgttagGGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTG
EST: TAACACTCTGGGTGTCTTTTCTTTCTGAGTACCTAGTTAACGCCATTGAG GGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTG
genomic: TAACACTCTGGGTGTCTTTTCTTTCTGAGTACCTAGTTAACGCCATTGAGgtattcttct ... ttgctgttagGGAGCATCTGATTCATTGAACCTACCGGTGGCTTTTATCAGTGTTATTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGAAGCTGAGATTGGCATGTGGGAGGCAGTAACATGGCTTGCGGTTTTAACACTCTGGGTGTCTTTTCTTTCTGAGTACCTAGTTAACGCCATTGAGgtattcttcttctccaattcaacaagaaagaataaaaagtcagcttttattcatctgtagcaagtggaacttgttaaaggtagcttcctacagttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaaa