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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTAGCTACCGAAAACTTTCATCATTGAGGAAGCAGTTCCCAGATATCCCTTTGTTAGCTTTAACTGCAACTGCTGTACCGAAgtaatgcaacctgccaacctcatgtttacctctttactttttcgtctcaatatcatggcctcatttattcattttttcctgcaccag

Basic information

species Zea mays
transcript GRMZM2G039683_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039683_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g54020.1 (Oryza sativa), 5'ss of exon 8
ACCTAGCTACCGAAAACTTTCATCATTGAGGAAGCAGTTCCCAGATATCCCTTTGTTAGCTTTAACTGCAACTGCTGTACCGAAgtaatgcaacctgcca------------acct--catgtttacctct-ttactttttcgtctcaatatcatggcctca---tttattcattttttcct-gcaccag
|||||| ||||| || ||||||||| ||||||| ||||||||||| || ||| | ||||||||||||||||| || || || ||||||  ||   | ||             ||||  ||   | || ||| ||  | |||      | | |  |    |||   || ||||  |||||| |  ||||||
ACCTAGTTACCGCAAGCTTTCATCACTGAGGAACCAGTTCCCAGACATACCTATATTAGCTTTAACTGCAACCGCAGTTCCAAAgtaagacactatccccttaatagtcactacctgccaccatcacttctcttgatattttaatctagtgttttctattcacacttcattctctttttctttacaccag

upper sequence: GRMZM2G039683_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv11s0016g00850.t01 (Vitis vinifera), 5'ss of exon 7
ACCTAGCTACCGAAAACTTTCATCATTGAGGAAGCAGTTCCCAGATATCCCTTTGTTAGCTTTAACTGCAACTGCTGTACCGAAgtaa---tgcaacctgccaacctcatgtttacctctttactttttcgtctcaatat-catggcctcatttattcattttttcctgcaccag----------
 ||||||||||| ||||||||||| |||||||| ||  |||||||| | ||  | || || ||||| || || ||||| || |||| |   ||||   |  |   ||  |  |     || |  |  |||      ||||   |     ||   | | || | ||  |  |  ||          
GCCTAGCTACCGGAAACTTTCATCTTTGAGGAACCACCTCCCAGATGTACCAATATTGGCATTAACAGCCACAGCTGTTCCTAAgtgagtctgcagtttcacttgcttttcctagatgctgtgataattctgtgggatatatgtatatgcacacaattatatattg-taaagaagttggaatttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60399085|gb|DN231899.1|DN231899
EST:     CAGTTCCCAGATATCCCTTTGTTAGCTTTAACTGCAACTGCTGTACCGAA                         GGTCCAGAAAGATGTGGTATCATCATTGTGCTTGCAAAATCCAGTAATTCT
genomic: CAGTTCCCAGATATCCCTTTGTTAGCTTTAACTGCAACTGCTGTACCGAAgtaatgcaac ... cctgcaccagGGTCCAGAAAGATGTGGTATCATCATTGTGCTTGCAAAATCCAGTAATTCT
EST: gi|60350164|gb|DN217137.1|DN217137
EST:     CAGTTCCCAGATATCCCTTTGTTAGCTTTAACTGCAACTGCTGTACCGAA                         GGTCCAGAAAGATGTGGTATCATCATTGTGCTTGCAAAATCCAGTAATTCT
genomic: CAGTTCCCAGATATCCCTTTGTTAGCTTTAACTGCAACTGCTGTACCGAAgtaatgcaac ... cctgcaccagGGTCCAGAAAGATGTGGTATCATCATTGTGCTTGCAAAATCCAGTAATTCT