1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGCAAACAGGGTTGCTTCTGTTGTGGCCAATGAGTGGAAAGATTCTAATGACAAGGTGATGCCAGTTAAACAGTGGCTTGAAGAGCGTAGGTTCTTGCAGgtctgatggttaaactggcctttttctttaccaatgtactttgtagcatccacctctgcaaaaatatgcatattctttggtgaaacaaaatgtaccagctgttggtccgttgttggacacgtttctttgttgaatatcatttgtgataatttcttgtttttacag
species | Zea mays |
transcript | GRMZM2G039325_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACAAGGTGATGCCAGTTAAACAGTGGCTTGAAGAGCGTAGGTTCTTGCAG GGGGAGATGCAACAACTTCGTGACAAGCTAGCTGTTGCAGAACGTEST: gi|211166804|gb|FK981058.1|FK981058
genomic: ACAAGGTGATGCCAGTTAAACAGTGGCTTGAAGAGCGTAGGTTCTTGCAGgtctgatggt ... gtttttacagGGGGAGATGCAACAACTTCGTGACAAGCTAGCTGTTGCAGAACGT
EST: ACAAGGTGATGCCAGTTAAACAGTGGCTTGAAGAGCGTAGGTTCTTGCAG GGGGAGATGCAACAACTTCGTGACAAGCTAGCTGTTGCAGAACGTACAGCAEST: gi|29945925|gb|CB815889.1|CB815889
genomic: ACAAGGTGATGCCAGTTAAACAGTGGCTTGAAGAGCGTAGGTTCTTGCAGgtctgatggt ... gtttttacagGGGGAGATGCAACAACTTCGTGACAAGCTAGCTGTTGCAGAACGTACAGCA
EST: ACAAGG-GATGCCAGTTAAACAGTGGCTTGAAGAGCGTAGGTTCTTGCAG GGGGAGATGCAACAACTTCGTGACAAGCTAGCTGTTGCAGAACGTACAGCAEST: gi|28910649|gb|CB331544.1|CB331544
genomic: ACAAGGTGATGCCAGTTAAACAGTGGCTTGAAGAGCGTAGGTTCTTGCAGgtctgatggt ... gtttttacagGGGGAGATGCAACAACTTCGTGACAAGCTAGCTGTTGCAGAACGTACAGCA
EST: ACAAGGTGATGCCAGTTAAACAGTGGCTTGAAGAGCGTAGGTTCTTGCAG GGGGAGATGCAACAACTTCGTGACAAGCTAGCTGTTGCAGAACGTACAGCA
genomic: ACAAGGTGATGCCAGTTAAACAGTGGCTTGAAGAGCGTAGGTTCTTGCAGgtctgatggt ... gtttttacagGGGGAGATGCAACAACTTCGTGACAAGCTAGCTGTTGCAGAACGTACAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAAACAGGGTTGCTTCTGTTGTGGCCAATGAGTGGAAAGATTCTAATGACAAGGTGATGCCAGTTAAACAGTGGCTTGAAGAGCGTAGGTTCTTGCAGgtctgatggttaaactggcctttttctttaccaatgtactttgtagcatccacctctgcaaaaatatgcatattctttggtgaaacaaaatgtaccagctgttggtccgttgttggacacgtttctttgttgaatatcatttgtgataatttcttgtttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA