1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaacgttcacttgaaccatcgtgcatgtgtatgtcttcgccaatattataagggttcgacttggctctgactggctgaattctgtacag
species | Zea mays |
transcript | GRMZM2G038598_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGACGTCCGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCEST: gi|71440043|gb|DR821093.1|DR821093
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTTEST: gi|148951201|gb|EC896889.2|EC896889
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTTTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTTEST: gi|31250360|gb|CD219384.1|CD219384
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCEST: gi|74240923|gb|DT648837.1|DT648837
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCEST: gi|91053192|gb|EB163610.1|EB163610
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCEST: gi|211169445|gb|FL037896.1|FL037896
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCEST: gi|71440044|gb|DR821094.1|DR821094
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAA-TCCCTCTGGTGTEST: gi|74237589|gb|DT645503.1|DT645503
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGT
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCEST: gi|78085824|gb|DV514217.1|DV514217
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTTEST: gi|149087171|gb|EE176707.2|EE176707
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTTEST: gi|211169444|gb|FL037895.1|FL037895
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCEST: gi|18660097|gb|BM500685.1|BM500685
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCCGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAA-CCCTCTGGEST: gi|32845045|gb|CD984726.1|CD984726
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGG
EST: GGACGTCCGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCEST: gi|211091121|gb|FL440769.1|FL440769
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCEST: gi|32845258|gb|CD984939.1|CD984939
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCCGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCEST: gi|71429156|gb|DR810206.1|DR810206
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCEST: gi|32844790|gb|CD984471.1|CD984471
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCCGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCEST: gi|32844896|gb|CD984577.1|CD984577
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCCGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGCAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCEST: gi|69351133|gb|DR452031.1|DR452031
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAN AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACEST: gi|58029768|gb|CX725195.1|CX725195
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGAC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAANACCCGGAAACGCANANATCGTCEST: gi|116828756|gb|EC860854.1|EC860854
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCEST: gi|50335983|gb|CO531109.1|CO531109
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTTTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTTEST: gi|18163517|gb|BM333356.1|BM333356
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTCEST: gi|78121122|gb|DV539506.1|DV539506
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
EST: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAG AAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTT
genomic: GGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaa ... ttctgtacagAAAATCCCTCTGGTGTTCGCTGGGCGAAGACCCGGAGACGCAGAGATCGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTGAAGTGTACAACTTGGGGACTGGAAAGGGGACGTCGGTGTTGGAAATGGTGGCTGCATTCGAGAAGGCTTCTGGGAAGgtaaaatcaacgttcacttgaaccatcgtgcatgtgtatgtcttcgccaatattataagggttcgacttggctctgactggctgaattctgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG