1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTCTGGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGATgtatgtgcctttaagttttgtagctttattataggacttaagtatgcacattctatttaatcagacatggctaaggtgctaattttttatgtactgtctgctggatgaacacttcag
species | Zea mays |
transcript | GRMZM2G037683_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATRTCAAGCCGAT GAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGGEST: gi|211475898|gb|FL358552.1|FL358552
genomic: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGATgtatgtgcct ... aacacttcagGAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGG
EST: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGAT GAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGGEST: gi|76010783|gb|DT937953.1|DT937953
genomic: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGATgtatgtgcct ... aacacttcagGAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGG
EST: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCTATATCAAGCCGAT GAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGGEST: gi|67019283|gb|CO448032.1|CO448032
genomic: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGATgtatgtgcct ... aacacttcagGAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGG
EST: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGAT GAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGGEST: gi|23357683|gb|BU645332.1|BU645332
genomic: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGATgtatgtgcct ... aacacttcagGAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGG
EST: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGAT GAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGGEST: gi|111433444|gb|EE297761.1|EE297761
genomic: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGATgtatgtgcct ... aacacttcagGAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGG
EST: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGAT GAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGGEST: gi|22521028|gb|BU079839.1|BU079839
genomic: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGATgtatgtgcct ... aacacttcagGAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGG
EST: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGAT GAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGGEST: gi|211160334|gb|FL327726.1|FL327726
genomic: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGATgtatgtgcct ... aacacttcagGAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGG
EST: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGAT GAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGGEST: gi|26457208|gb|CA828791.1|CA828791
genomic: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGATgtatgtgcct ... aacacttcagGAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGG
EST: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGAT GAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGGEST: gi|91873183|gb|EB403140.1|EB403140
genomic: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGATgtatgtgcct ... aacacttcagGAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGG
EST: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGAT GAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGG
genomic: GGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGATgtatgtgcct ... aacacttcagGAAAGCTTTATGATGCACGAGGAACCTGTGCTGTGTGTTGATTTTAGTAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGGGATTATCTTAGTGGAAAGCTTAAAAAGGATCTTCAATATCAAGCCGATgtatgtgcctttaagttttgtagctttattataggacttaagtatgcacattctatttaatcagacatggctaaggtgctaattttttatgtactgtctgctggatgaacacttcag
- - - - - - - AGTGGA