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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCAATAGTTGTTGGCAGGCCAATACTGCTTGCACTGGAAGATATAGATGGCAGTCCTTCTTTTCTGGAAAAAGCTTTGTGTTTCCTTGAGAAACATGgtaggaccaagcaatgttcattgtcgtcaaagtttggaacctgctgcactttactgttgtaaacattttgtgtgaaatatgaataatttcttgcag

Basic information

species Zea mays
transcript GRMZM2G036872_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036872_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g46450.1 (Oryza sativa), 5'ss of exon 7
AAATCAATAGTTGTTGGCAGGCCAATACTGCTTGCACTGGAAGATATAGATGGCAGTCCTTCTTTTCTGGAAAAAGCTTTGTGTTTCCTTGAGAAACATGgtaggaccaagcaatgttcatt----gtcgtcaa---agtttggaacctgctgcactttactgttgtaaacattttgtgtgaaatatgaataatttcttgcag
|||||| | |||||||| ||||| || || ||||||||||||||||| |||||||| |||||||| || |||||||||||| |||| ||||||| |||||||| |   || || ||||| ||    ||  ||||   |||| | ||    ||| ||    |  |   ||| ||| | || ||||| |||||| |||||| |||
AAATCATTGGTTGTTGGTAGGCCGATTCTTCTTGCACTGGAAGATATTGATGGCAGCCCTTCTTTCCTAGAAAAAGCTTTGCGTTTTCTTGAGAGACATGgtatggataatcattgttcgttatcagttatcaatgaagttcgaaaatgcctgaac----ccatccaaaaaattgtttg-gaaatgtgaata-tttctttcag

upper sequence: GRMZM2G036872_T01 (Zea mays), 5'ss of exon 7
lower sequence: PP1S271_62V6.1 (Physcomitrella patens), 5'ss of exon 7
AAATCAATAGTTGTTGGCAGGCCAATACTGCTTGCACTGGAAGATATAGATGGCAGTCCTTCTTTTCTGGAAAAAGCTTTGTGTTTCCTTGAGAAACATGgtaggaccaagcaatgttcattgtcgtcaaagtttggaacctgctgcactttactgt-tgtaaacattt-tgtgtgaaatatgaataatttcttgcag---------------------------
|| ||  | ||  |||||||||||||| | |||||  | |||||||| ||||| |||||||| || ||||| |||||| |   |||  |||| |   |||||| ||        ||||     |  |  ||  |   |     | | | | |||      |   ||| | ||||  |||   ||   |    |                                
AAGTCTCTTGTCATTGGCAGGCCAATATTACTTGCTTTAGAAGATATCGATGGAAGTCCTTCCTTCCTGGAGAAAGCTCTTACTTTTATTGAAACCTATGgtatgatattattctgttgggcatactttaaaat-acagttcacagaattataccaagcatcttcatctctgtgaaaaaaccgatcgagcgttcctgatcctaatatagttattcatgtcaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149074587|gb|EE162990.2|EE162990
EST:     TGGCAGTCCTTCTTTTCTGGAAAAAGCTTTGTGTTTCCTTGAGAAACATG                         GAATGAAGGTGGAAGGAATTTTGCGTCAAGCTGCAGATGTGGAGGAGGTTG
genomic: TGGCAGTCCTTCTTTTCTGGAAAAAGCTTTGTGTTTCCTTGAGAAACATGgtaggaccaa ... tttcttgcagGAATGAAGGTGGAAGGAATTTTGCGTCAAGCTGCAGATGTGGAGGAGGTTG