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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCCTGGACATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAGgtatctaccagtgccctgcaatacaaattcttgaatactgcatgctatttaatctgatcctctaaacatcttggtttgtag

Basic information

species Zea mays
transcript GRMZM2G035338_T02
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37389954|gb|CF632202.1|CF632202
EST:     ATTTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAG                         GGTCCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
genomic: A-TTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAGgtatctacca ... tggtttgtagGGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
EST: gi|60350250|gb|DN217223.1|DN217223
EST:     CATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAG                         GGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
genomic: CATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAGgtatctacca ... tggtttgtagGGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
EST: gi|78179609|gb|DV549982.1|DV549982
EST:     CATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAG                         GGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
genomic: CATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAGgtatctacca ... tggtttgtagGGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
EST: gi|88751321|gb|DY535462.1|DY535462
EST:     CATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAG                         GGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
genomic: CATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAGgtatctacca ... tggtttgtagGGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
EST: gi|6952677|gb|AW424745.1|AW424745
EST:     CATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAG                         GGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
genomic: CATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAGgtatctacca ... tggtttgtagGGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
EST: gi|211532388|gb|FL468965.1|FL468965
EST:     CATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAG                         GGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
genomic: CATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAGgtatctacca ... tggtttgtagGGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
EST: gi|149082265|gb|EE171450.2|EE171450
EST:     CATTCAATCCATCACTGTTTTTGAAATGTCTACATACACTAAGAACAGAG                         GGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
genomic: CATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAGgtatctacca ... tggtttgtagGGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
EST: gi|94472538|gb|EB701496.1|EB701496
EST:     CATTCAATCCATCACTGTTTTTGAAATGTCTACATACACTAAGAACAGAG                         GGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
genomic: CATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAGgtatctacca ... tggtttgtagGGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
EST: gi|71766668|gb|DR964605.1|DR964605
EST:     CATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAG                         GGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
genomic: CATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAGgtatctacca ... tggtttgtagGGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG
EST: gi|86470370|gb|DY236740.1|DY236740
EST:     CATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAG                         GGTTCAGTTTATGCTCCATCATTTGATCATGGTGTGGGCGACCCAGTTGAG
genomic: CATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAGgtatctacca ... tggtttgtagGGTTCAGTTTATGCTCCATCATTTGATCATGGTGTTGGCGACCCAGTTGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACCCTGGACATTCAATCCATCACTGTTTCTGAAATGTCTACATACACTAAGAACAGAGgtatctaccagtgccctgcaatacaaattcttgaatactgcatgctatttaatctgatcctctaaacatcttggtttgtag

- - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC