Sequence
atgc intronic sequence ATGC exonic sequenceGTTAATCCTTCAGATGTTATTATTTTGGAAGGAATTCTAGTTTTTCATGATTCACGCCTCAGGGATTTGATGAACATGAAGATCTTCGTTGATACAGgtacaaatatttgcttataagttgatgatgttttcttctgtctcccttgcctgttgatattccagaagttcccaatgcacaagcattgattcctgactat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g17320.1 (Oryza sativa), 5'ss of exon 6
GTTAATCCTTCAGATGTTATTATTTTGGAAGGAATTCTAGTTTTTCATGATTCACGCCTCAGGGATTTGATGAACATGAAGATCTTCGTTGATACAGgtacaaatatttgcttataagttgatgatgttttcttctgtctcccttgcctgttgatatt--ccagaagttcccaatgca-caagcattgattcctgactat
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GTCAATCCTTCAGATGTAATTATTTTGGAAGGAATTCTGGTTTTCCATGATTCACGTGTCCGGGATTTGATGAACATGAAGATCTTTGTTGACACAGgtatcaatatttgcatgccaaactgtcttattatctctag---ctcttgcccatgaccagtaatcatcagttgtacgtgtggtcagtatgattatttccatat
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 5'ss of exon 6
GTTAATCCTTCAGATGTTATTATTTTGGAAGGAATTCTAGTTTTTCATGATTCACGCCTCAGGGATTTGATGAACATGAAGATCTTCGTTGATACAGgtacaaatatttgcttat-aagttgatgatgttttctt-ctgtctcccttgcctgttgatattccagaagttcccaatgcacaagcatt-gattcctgactat
|| |||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| || |||| ||||||||||||||||| || ||||||||||||| ||| ||||| | || ||||||| | || || | ||| || | | || || || | | | || ||| | | |
GTCAATCCTTCAGATGTAATTATTTTGGAAGGTATTCTGGTTTTCCATGATTCACGTGTCCGGGACTTGATGAACATGAAGATATTTGTTGATACAGgtatcaatgtttgcacaccaaactgatgataatctcaaactcttgcccatgaccagcaaccatc-agttgtacttgtggtcagtgtgtttaattgtttatt--
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 6
GTTAATCCTTCAGATGTTATTATTTTGGAAGGAATTCTAGTTTTTCATGATTCACGCCTCAGGGATTTGATGAACATGAAGATCTTCGTTGATACAGgtacaaatatttgcttataagttgatgatgttttcttctgtctccctt--gcctgttgatat-tccagaagttcccaatgcacaagcattgattcctgactat
| || |||||||||||||| ||||| ||||| || || ||||| |||||| |||| | |||| |||||||| |||||||| || ||||| |||||| | | | |||| | | | | | | | | | | ||||| | | | | || || | | | | | | ||
-TGAACCCTTCAGATGTTATAATTTTAGAAGGCATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGGtcctttattattgttattccatctttaactcagaatttatttattgtaagtttgttgttgtatttgttaatttataagggaaatggtccatcttttatct--
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 6
GTTAATCCTTCAGATGTTATTATTTTGGAAGGAATTCTAGTTTTTCATGATTCACGCCTCAGGGATTTGATGAACATGAAGATCTTCGTTGATACAGgt-----acaaatatttgcttata---agttgatgatgttttcttctgtctcccttgcctgttgatattccagaagttcccaatgcacaagcattgattcctgactat
|| || |||||||||||||| ||||||||||| || || ||||| ||||| |||| | |||| |||||||| |||||||| || ||||| |||||| | | | ||| || | || | || | || || | | | | |||| |||| || | | | | || || |
GTGAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGACCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGgtcctttattattgtttttccatctttaattcagaatttatttttttattgtaaattttcagttgtattt-gttagtttgtaagggatatg-gttcatcttt------
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA02G47270.1 (Glycine max), 5'ss of exon 6
GTTAATCCTTCAGATGTTATTATTTTGGAAGGAATTCTAGTTTTTCATGATTCACGCCTCAGGGATTTGATGAACATGAAGATCTTCGTTGATACAGgtacaaatatttgcttataagttgatgatgttttcttctgtctcccttgcctgttgatattccagaagttcccaatgcacaagcattgattcctgactat---
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GTAAACCCAGCGGATGTTATTATTTTGGAAGGTATCCTTGTTTTTCATGATCCACGAGTGCGAGCATTGATGAATATGAAGATATTTGTTGACACAGgtcc---cttattattttagttccaatataacttctataacttactgtattatatttttctgtggcatttcttactatgtatggatctgttgtcaaactcatt
upper sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 6
GTTAATCCTTCAGATGTTATTATTTTGGAAGGAATTCTAGTTTTTCATGATTCACGCCTCAGGGATTTGATGAACATGAAGATCTTCGTTGATACAGgtacaaatatttgcttataagttgatgatgtt--ttcttctgtctc-ccttgcctgttgatattccagaagttcccaatgcacaagcattgattcctgactat
|| || ||||||||||| || ||||||||||| || || ||||||||||| || || |||| ||||||||||||||||| || |||||||||||| | || | | | | |||| ||||| | | |||| || | | || || | | ||| | | || || | |
GTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAGgttctttctttctgcctttactgcagaatgtcaattcttgtacttggtcttgtcttatttattaatagcttttgtccaggcatgaactgtgcttttagtc---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60344955|gb|DN211928.1|DN211928EST: TGATTCACGCCTCAGGGATTTGATGAACATGAAGATCTTCGTTGATACAG ATGCCGACGTACGGTTAACAAGGAGGATCCGTCGTGATACCATTGACAAGG
genomic: TGATTCACGCCTCAGGGATTTGATGAACATGAAGATCTTCGTTGATACAGgtacaaatat ... gatttctcagATGCCGACGTACGGTTAACAAGGAGGATCCGTCGTGATACCATTGACAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTAATCCTTCAGATGTTATTATTTTGGAAGGAATTCTAGTTTTTCATGATTCACGCCTCAGGGATTTGATGAACATGAAGATCTTCGTTGATACAGgtacaaatatttgcttataagttgatgatgttttcttctgtctcccttgcctgttgatattccagaagttcccaatgcacaagcattgattcctgactat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA