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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAAAGGATGTGCTGATGCGTGTTGTGGCCCAAAATCTTTCTCCTGAGTTAACTCTAGTAGAAAAGgtttctcctgcagatttatgatttgtattccaaaagatgttgaattttgtattcatcctagacacacagtgtctactattttgatccag

Basic information

species Zea mays
transcript GRMZM2G031609_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031609_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g06930.1 (Oryza sativa), 5'ss of exon 7
CTCAAAGGATGTGCTGATGCGTGTTGTGGCCCAAAATCTTTCTCCTGAGTTAACTCTAGTAGAAAAGgtttctcctgcagatt---tatgattt---gtattccaaaagat-gttgaattttgta-ttcatcctagacacacagtgtc---tactattttgatccag
||||||||||||||| ||||| |||||| | |||||||| ||||||||||||||||  ||||||||||||  | || ||||||   ||| ||||    |  |  |||  |  | ||  || |  | ||||| ||||||  ||||  |     ||| ||||| || ||
CTCAAAGGATGTGCTTATGCGCGTTGTGACACAAAATCTCTCTCCTGAGTTAACTCATGTAGAAAAGgttgtttctccagattgaatattattttaaatgatttaaactaccgatgggttatacaattcattctagactaacagcattactcactgttttgctcaag

upper sequence: GRMZM2G031609_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA05G32930.1 (Glycine max), 5'ss of exon 7
CTCAAAGGATGTGCTGATGCGTGTTGTGGCCCAAAATCTTTCTCCTGAGTTAACTCTAGTAGAAAAGgtttctcctgcagatttatgatttgtattccaaaagatgt-tgaattttgtattcatcctag--acacacagtgtctactattttgatccag--------------------------------------------------------------
 ||||||||  | || |||||||||||||| |||||||||||||||||||| ||||| || |||||||||  |  | |   ||||  |||||| ||    |||     ||| |          || | |  | |     | |||  | ||| | ||                                                                 
TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttatttctt-tttaatatttgttttttggaagtgacatgagtggaaagagggtcattgtgagaggtcctttcttttgtttggttctgattttttgctaagtattcagaactgagttgattttctacttgattcttccctttctcacgtag

upper sequence: GRMZM2G031609_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 7
CTCAAAGGATGTGCTGATGCGTGTTGTGGCCCAAAATCTTTCTCCTGAGTTAACTCTAGTAGAAAAGgtttctcctgcagatttatgatttgtattccaaaagatgttgaattttgtattcatcctagacacacagtgtctactattttgatccag---------------------------------------------------------------
 ||||||||  | || |||||||||||||| |||||||||||||||||||| ||||| || |||||||||  |  | ||  || ||  ||  | ||   ||     |||| |          || | |  | |     |    |  |||| | | |                                                               
TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttatttcattttaatatttattttttggaagtgacttgagtggaaagagggtcgttgtgagaggcctttcttttgtttggttctgattttttgctaaatattcagaactgagttgattttcttcttgattcttccctttctaatgtag

upper sequence: GRMZM2G031609_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 7
CTCAAAGGATGTGCTGATGCGTGTTGTGGCCCAAAATCTTTCTCCTGAGTTAACTCTAGTAGAAAAGgtttctcctgcagatttatgatttgtattccaaaagatgttgaattttgtattcatcctagacacacagtgtctactattttga----tccag---------
 ||||||||| | || ||||| |||||||| ||||| |||||||||||||| ||||| || |||||||||  |  ||   |  ||   || ||||  |  |  ||  |  || | ||||   |  |  |  || |  | | | ||||  ||    | ||          
TTCAAAGGATATTCTTATGCGGGTTGTGGCACAAAACCTTTCTCCTGAGTTGACTCTGGTGGAAAAGgttgttgttgtgaaactactgtt-gtataactgatcattgtttatat-gtatgtgttttgaatgcatatagcccattattgagaatatttcataatgcctga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76290187|gb|DV029755.1|DV029755
EST:     TGCGTGTTGTGGCCCAAAATCTTTCTCCTGAGTTAACTCTAGTAGAAAAG                         GTAATGACTGCACACCCCGACTGTGCTACATTGGACACAACAATCCTTGAT
genomic: TGCGTGTTGTGGCCCAAAATCTTTCTCCTGAGTTAACTCTAGTAGAAAAGgtttctcctg ... tttgatccagGTAATGACTGCACACCCCGACTGTGCTACATTGGACACAACAATCCTTGAT