1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTCCAATATGGTAATCCTGATGTCTTGTGCTCCCCACTAGCTGAAGCAAAGAAGAATGGGACAGATTTGGTGgtaagtagttgttttctgaaagcaggattaaaagggaaacatttttcaagaatcatgtgttgactaaattgataagatttctgttttctaaagatctttgttgcaagtaagcacatgataattccttgcggagcttgattcttatcttctaacttactttctcgtaaatctagcatgttctaacaactgttatcatgcag
species | Zea mays |
transcript | GRMZM2G031572_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCTTGTGCTCCCCACTAGCTGAAGCAAAGAAGAATGGGACAGATTTGGTG GAAACATTTGCTAGTTACGTGAAAGATTATTACATTGGAAAATTTGGGGCGEST: gi|67038480|gb|CO464800.1|CO464800
genomic: TCTTGTGCTCCCCACTAGCTGAAGCAAAGAAGAATGGGACAGATTTGGTGgtaagtagtt ... tatcatgcagGAAACATTTGCTAGTTACGTGAAAGATTATTACATTGGAAAATTTGGGGCG
EST: TCTTGTGCTCCCCACTAGCTGAAGCAAAGAAGAATGGGACAGATTTGGTG GAAACATTTGCTAGTTACGTGAAAGATTATTACATTGGAAAATTTGGGGCGEST: gi|31355151|gb|CD439508.1|CD439508
genomic: TCTTGTGCTCCCCACTAGCTGAAGCAAAGAAGAATGGGACAGATTTGGTGgtaagtagtt ... tatcatgcagGAAACATTTGCTAGTTACGTGAAAGATTATTACATTGGAAAATTTGGGGCG
EST: TCTTGTGCTCCCCACTAGCTGAAGCAAAGAAGAATGGGACAGATTTGGTG GAAACATTTGCTAGTTACGTGAAAGATTATTACATTGGAAAATTTGGGGCG
genomic: TCTTGTGCTCCCCACTAGCTGAAGCAAAGAAGAATGGGACAGATTTGGTGgtaagtagtt ... tatcatgcagGAAACATTTGCTAGTTACGTGAAAGATTATTACATTGGAAAATTTGGGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCAATATGGTAATCCTGATGTCTTGTGCTCCCCACTAGCTGAAGCAAAGAAGAATGGGACAGATTTGGTGgtaagtagttgttttctgaaagcaggattaaaagggaaacatttttcaagaatcatgtgttgactaaattgataagatttctgttttctaaagatctttgttgcaagtaagcacatgataattccttgcggagcttgattcttatcttctaacttactttctcgtaaatctagcatgttctaacaactgttatcatgcag
- - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG