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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTGCTTCGTTTTGCAAACCGCTTATTTTTGCCTCTCTGGAACCGTGATAACATAGCTAACGTACAGgtaagatcctttcctaggtggttacagtattttttttatttctttataaatcatggttggctgttataagttgataacacatcttttgtcagtttgtctgaagaattaaataaaattgatgtcaaaaagctgtattttttcagtaattattgtgcctaacatatgttcttgcatgtaatgaatgaattctgcag

Basic information

species Zea mays
transcript GRMZM2G031107_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031107_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g38840.1 (Oryza sativa), 5'ss of exon 7
CTTGTGCTTCGTTTTGCAAACCGCTTATTTTTGCCTCTCTGGAACCGTGATAACATAGCTAACGTACAGgtaagatcctttcctaggtggttacagtattttttttatttctttataaatcatggttggctgttataagttgataacacatcttttgtcagtttgtctgaagaattaaataaaattgatgtcaaaaagctgtat--tttttcagtaattattgtgcctaacatatgttcttgcatgtaatgaatgaattctgcag
||||||||||| ||||||||||| || ||  | ||||| ||||| ||||||||||| ||||| |||||||||| || |||| ||| || ||        ||| | | ||| ||| | ||   | |||   |  ||| |          |||| | ||| | || || | |||  || |||  | | | | |  |||  ||| |   ||||    | || || ||||  |  | |||| |||| |  |||| |||  || ||||||
CTTGTGCTTCGCTTTGCAAACCGTTTGTTCCTACCTCTTTGGAATCGTGATAACATTGCTAATGTACAGgtaatatgcttttctatgtagtc------ctttgtatttttatttgtcaactgtagttacat-ctatga----------catcctctgtta-ttggtataaag--ttgaatggattagttttggaaattctggaaagttttatcattatcatggtgcgaacaacatgtgcttgaacataataaatatatgctgcag

upper sequence: GRMZM2G031107_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA19G22690.1 (Glycine max), 5'ss of exon 7
CTTGTGCTTCGTTTTGCAAACCGCTTATTTTTGCCTCTCTGGAACCGTGATAACATAGCTAACGTACAGgtaagatcctttcctag-gtggttacagtattttttttatttctttataaatcat-ggttggctgttataagttgataacacatcttttgtca-gtttgtctgaagaattaaataaaattgatgtcaaaaagctgtattttttcagtaattattgtgcctaacatatgttcttgcatgtaatgaatgaattctgcag
 | || ||||||||||||||||| |||||  ||||||| ||||||||||| ||||| ||||| || ||||| |||   | | ||      |||||  || |    | ||      |    | ||  ||||||| | | || || |||   |||  |||| |   | |  |||                                                                                              
TTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAGgtgagaaagtgtgctgccaaagttac--tactgaagtcatcaaacaaggccttattagttggct-tgacaaattcatatttcataatttgcctcatctaactg----------------------------------------------------------------------------------------------

upper sequence: GRMZM2G031107_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv14s0171g00490.t01 (Vitis vinifera), 5'ss of exon 7
CTTGTGCTTCGTTTTGCAAACCGCTTATTTTTGCCTCTCTGGAACCGTGATAACATAGCTAACGTACAGgtaagatccttt-cctaggtggttacagtattttttttatttctttataaatcatggttggctgttataagttgataac-acatcttttgtcagtttgtctgaagaattaaataaaattgatgtcaaaaagctgtattttttcagtaattattgtgcctaacatatgttcttgcatgtaatgaatgaattctgcag
 | || |||||||||||||| ||| | |||||||| |||||||||||||| ||||| | ||| |||||||| |||| | ||   | |||| ||||      | |   | || |||| |      |           ||| ||  |||| | |   |||    | |   || |||                                                                                           
TTGGTACTTCGTTTTGCAAATCGCATGTTTTTGCCCCTCTGGAACCGTGACAACATTGATAATGTACAGgttagattccttattttggtgattac-----ctctgaaacttatttacagggtgagacca-tgaaagtaaattattaactataagatttaggtggtatcctcaagt------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|111146774|gb|EE258268.1|EE258268
EST:     ACCGCTTATTTTTGCCTCTCTGGAACCGTGATAACATAGCTAACGTACAG                         ATCGTATTTAAGGAAGACTTTGGAACTGAAGGACGTGGAGGATATTTTGAT
genomic: ACCGCTTATTTTTGCCTCTCTGGAACCGTGATAACATAGCTAACGTACAGgtaagatcct ... aattctgcagATCGTATTTAAGGAGGACTTTGGAACTGAAGGACGTGGAGGATATTTTGAT
EST: gi|60672339|gb|DN475101.1|DN475101
EST:     ACCGCTTATTTTTGCCTCTCTGGAACCGTGATAACATAGCTAACGTACAG                         ATCGTATTTAAGGAAGACTTTGGAACTGAAGGACGTGGAGGATATTTTGAT
genomic: ACCGCTTATTTTTGCCTCTCTGGAACCGTGATAACATAGCTAACGTACAGgtaagatcct ... aattctgcagATCGTATTTAAGGAGGACTTTGGAACTGAAGGACGTGGAGGATATTTTGAT
EST: gi|18661166|gb|BM501251.1|BM501251
EST:     CATAGCTAACGTACAG                         ATCGTATTTNAGGNGGACTTTGGAACTGAAGGACGTGGAGGATATTTTGAT
genomic: CATAGCTAACGTACAGgtaagatcct ... aattctgcagATCGTATTTAAGGAGGACTTTGGAACTGAAGGACGTGGAGGATATTTTGAT