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GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAGgttagaaaaattaaaacatggtttgcatggaacactgcatctggtttccttcaattagtgatagtactgtttcataatgttcataatgctgctatgctat...
species | Zea mays |
transcript | GRMZM2G030902_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTEST: gi|22545757|gb|BU098131.1|BU098131
genomic: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAGgttagaaaaa ... acactcacagGAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGT
EST: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGGCATCGGGGAATTGGGTTTATCACGTTTCAGAGTEST: gi|71769697|gb|DR967634.1|DR967634
genomic: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAGgttagaaaaa ... acactcacagGAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGT
EST: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTEST: gi|149096474|gb|EE182216.2|EE182216
genomic: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAGgttagaaaaa ... acactcacagGAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGT
EST: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTEST: gi|149000018|gb|EE037116.2|EE037116
genomic: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAGgttagaaaaa ... acactcacagGAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGT
EST: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTEST: gi|149104935|gb|EE290405.2|EE290405
genomic: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAGgttagaaaaa ... acactcacagGAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGT
EST: GCATTTTTGA-GCTTTTGGAGAAATTCTTGATCTTTACATGCCCAAG GAACATGGTTCAAAGGGEST: gi|71304925|gb|DR788593.1|DR788593
genomic: GCATTTT-GAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAGgttagaaaaa ... acactcacagGAACATGGTTCAAAGGG
EST: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAG GGACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTEST: gi|211138007|gb|FL213712.1|FL213712
genomic: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAGgttagaaaaa ... acactcacagGAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGT
EST: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTEST: gi|149080743|gb|EE169805.2|EE169805
genomic: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAGgttagaaaaa ... acactcacagGAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGT
EST: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTEST: gi|21432115|gb|BQ547605.1|BQ547605
genomic: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAGgttagaaaaa ... acactcacagGAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGT
EST: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTEST: gi|60350487|gb|DN217460.1|DN217460
genomic: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAGgttagaaaaa ... acactcacagGAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGT
EST: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTEST: gi|32847027|gb|CD986708.1|CD986708
genomic: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAGgttagaaaaa ... acactcacagGAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGT
EST: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTEST: gi|26558086|gb|CA830321.1|CA830321
genomic: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAGgttagaaaaa ... acactcacagGAACATGGTTCAAAGGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGT
EST: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAG GAACATGGTTCAAAGGGGCATCGTGGAATTGGGGTTTATCACGTTTCAGAG
genomic: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAGgttagaaaaa ... acactcacagGAACATGGTTCAAAGGGGCATCGTGGAATT-GGGTTTATCACGTTTCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAGgttagaaaaattaaaacatggtttgcatggaacactgcatctggtttccttcaattagtgatagtactgtttcataatgttcataatgctgctatgctat
- - TTGAAG
- - - TGAAGC
- - - - - - - TTGGAG
- - - - - - - TGGAGA
- - - - - - - - GGAGAA