1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTGCTGGTGATAGGCGGAGAACCGTTATGAGGCCACCTCAAGTTCTTAGGGAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAACgtgagtttcaacataatcgtgtctgcacatttcttttactgataatgtcccactttcattagtgctctctgctgctccaggtgataaaattacaatgaactaacttttaattgtatcttcag
species | Zea mays |
transcript | GRMZM2G030646_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGGEST: gi|14243773|gb|BG841436.2|BG841436
genomic: GAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAACgtgagtttca ... gtatcttcagGATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGG
EST: ATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGGEST: gi|31558627|gb|CD527839.1|CD527839
genomic: ATGGATTTGTGTAAAACgtgagtttca ... gtatcttcagGATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGG
EST: GAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGGEST: gi|148951303|gb|EC897010.2|EC897010
genomic: GAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAACgtgagtttca ... gtatcttcagGATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGG
EST: GAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGGEST: gi|37380869|gb|CF627276.1|CF627276
genomic: GAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAACgtgagtttca ... gtatcttcagGATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGG
EST: GAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCTGAAATGGGEST: gi|110202221|gb|EC884118.1|EC884118
genomic: GAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAACgtgagtttca ... gtatcttcagGATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGG
EST: GAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGGEST: gi|211383295|gb|FL097265.1|FL097265
genomic: GAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAACgtgagtttca ... gtatcttcagGATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGG
EST: GAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGGEST: gi|60359724|gb|DN226697.1|DN226697
genomic: GAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAACgtgagtttca ... gtatcttcagGATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGG
EST: GAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGGEST: gi|32805225|gb|CD957461.1|CD957461
genomic: GAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAACgtgagtttca ... gtatcttcagGATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGG
EST: TAATTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCTGAAATGGGEST: gi|71759681|gb|DR957618.1|DR957618
genomic: TAATTTTATGGATTTGTGTAAAACgtgagtttca ... gtatcttcagGATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGG
EST: GAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGG
genomic: GAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAACgtgagtttca ... gtatcttcagGATGCATAGGCAACCTGAGCATGTAATGATGTTTTTACTTGCCGAAATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCTGGTGATAGGCGGAGAACCGTTATGAGGCCACCTCAAGTTCTTAGGGAGGGAACAAAGAAGACAGTTTTTGTTAATTTTATGGATTTGTGTAAAACgtgagtttcaacataatcgtgtctgcacatttcttttactgataatgtcccactttcattagtgctctctgctgctccaggtgataaaattacaatgaactaacttttaattgtatcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG