1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GGTGCCAACTAGAAGTATCGGCCTTCTTTCTTACACATTTTTGATGGAAACAGGTTGCGATGATGTGCTGGTGCCAACGgtgagtttgacacttccttttctgtctgactgttattgtcatttgagctattttctagttcacctatcatcttctgagttttgatcttgtgtttgtcttgctgtcttgcag
species | Zea mays |
transcript | GRMZM2G030596_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTTACACATTTTTGATGGAAACAGGTTGCGATGATGTGCTGGTGCCAACG GTAGACTATCAGTATGATCTAACAAEST: gi|31359814|gb|CD444171.1|CD444171
genomic: CTTACACATTTTTGATGGAAACAGGTTGCGATGATGTGCTGGTGCCAACGgtgagtttga ... tgtcttgcagGTAGACTATCAGTATGATCTAACAA
EST: CTTACACATTTTTGATGGAAACAGGTTGCGATGATGTGCTGGTGCCAACG GTAGACTATCAGTATGATCTAACAACAACTTCATATGTTCAGATGTTGCGTEST: gi|78114931|gb|DV533319.1|DV533319
genomic: CTTACACATTTTTGATGGAAACAGGTTGCGATGATGTGCTGGTGCCAACGgtgagtttga ... tgtcttgcagGTAGACTATCAGTATGATCTAACAACAACTTCATATGTTCAGATGTTGCGT
EST: CT-ACACATTTTTGATGGAAACAGGTTGCGATGATGTGCTGGTGCCAACG GTAGACTATCAGTATGATEST: gi|78075870|gb|DV504304.1|DV504304
genomic: CTTACACATTTTTGATGGAAACAGGTTGCGATGATGTGCTGGTGCCAACGgtgagtttga ... tgtcttgcagGTAGACTATCAGTATGAT
EST: TTACACATTTTTTGATGGAAACAGGTTGCGATGATGTGCTGGTGCCAACG GTAGACTATCAGTATGATC
genomic: TTACACATTTTT-GATGGAAACAGGTTGCGATGATGTGCTGGTGCCAACGgtgagtttga ... tgtcttgcagGTAGACTATCAGTATGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGCCAACTAGAAGTATCGGCCTTCTTTCTTACACATTTTTGATGGAAACAGGTTGCGATGATGTGCTGGTGCCAACGgtgagtttgacacttccttttctgtctgactgttattgtcatttgagctattttctagttcacctatcatcttctgagttttgatcttgtgtttgtcttgctgtcttgcag
- - - - - - - - - - - - - - - - - - - - - GATGGA