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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACATGGCTGACATGCTCTCCCCAGATGAGTGGGACAAAGTTGCCGGAGTCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGgtaagttttttcactgctctgtggatgttattacagtcttcatttcggctcagggtcacgcagattataaatatttattgacttttggtttgacattgttcaggttag

Basic information

species Zea mays
transcript GRMZM2G030072_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030072_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g22430.1 (Oryza sativa), 5'ss of exon 9
-GTACATGGCTGACATGCTCTCCCCAGATGAGTGGGACAAAGTTGCCGGAGTCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGgtaagt--tttttcactgctctgtggatgttattacagtcttcatttcggctcagggtcacgcagattataaatatttattgacttttggtttgacattgttcaggttag
 ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||  |||||| | |||| ||||| | |||||||| || || ||| ||||||   |  | |  || ||||| ||| | ||           ||| |  | | |  ||      ||||  |||| | | |  |  |  ||| |   ||| |||     
AGTACATGGCTGACATGCTCTCCCCAGAGGAATGGGACAAAGTTGCTGGAGTCAGACGCCCTGATATTATGTGATGTTGTACATTGAAATTTTAA-ATTAGgtaagatatcctccgttgttctgtagat-tgat----------gtttggaattatgaacat-----ttattcatatatttggtttgatacttttatgatgtgcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32939510|gb|CF044329.1|CF044329
EST:     TCAGACATCCTGATCTAATGTGATGTTATTCATTGAAAGTTCAACATTTG                         GTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGgtaagttttt ... ttcaggttagGTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
EST: gi|9824865|gb|BE575172.1|BE575172
EST:     TCAGACATCCTGATCTAATGTGATGTTATTCATTGAAAGTTCAACATTTG                         GTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGgtaagttttt ... ttcaggttagGTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
EST: gi|8102628|gb|AW927429.1|AW927429
EST:     TCAGACATCCTGATCTAATGTGATGTTATTCATTGAAAGTTCAACATTTG                         GTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGgtaagttttt ... ttcaggttagGTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
EST: gi|56382319|gb|CV984988.1|CV984988
EST:     TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGGTTAG                     
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACA--T--TT-Ggtaagttttt ... ttcagg
EST: gi|9255042|gb|BE345510.1|BE345510
EST:     TCAGACATCCTGATCTAATGTGATGTTATTCATTGAAAGTTCAACATTTG                         GTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGgtaagttttt ... ttcaggttagGTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
EST: gi|16926968|gb|BM080036.1|BM080036
EST:     TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGGTTAG                     
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACA--T--TT-Ggtaagttttt ... ttcagg
EST: gi|9255043|gb|BE345511.1|BE345511
EST:     TTAGACATCCTGATCTAATGTGATGTTATTCATTGAAAGTTCAACATTTG                         GTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGgtaagttttt ... ttcaggttagGTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
EST: gi|32929228|gb|CF034040.1|CF034040
EST:     TCAGACATCCTGATCTAATGTGATGTTATTCATTGAAAGTTCAACATTTG                         GTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGgtaagttttt ... ttcaggttagGTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
EST: gi|60355320|gb|DN222293.1|DN222293
EST:     TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGGTTAG                     
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACA--T--TT-Ggtaagttttt ... ttcagg