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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAGATATCCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacacttgatgcccttaatgaaactttaggttttctaaacaaatcttaagggccatgctttataaacaaaaaaagttagaagtcctgcaagcttaacatatgcacttccgtcattttcccttttgggctccatatttcagttgtgacctgaaaatgtactgtgcttctacaatttctctag

Basic information

species Zea mays
transcript GRMZM2G029566_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029566_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g10310.3 (Oryza sativa), 5'ss of exon 7
CCAGAGATATCCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacacttgatgccctt--aatgaaactttaggttttctaaacaaatcttaagggccatgctttataaacaaaaaaagttagaagtcctgcaagcttaacatatgcacttccgtcattttcccttttgggctccatatttcagttgtgacctgaaaatgtactgtgcttctacaatttctctag
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||  | | | |||| | |   | |  || |||        |||  || | |  |     ||||||     |||||||   |||     |    ||                                                                          
CCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCAgtaagacacctgatgccttttcagttatactt-atgccatgttcactaatac-----accactctctgttga-----aaagtt-----tcctgcacatttattgctta-gtttttac----------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211126134|gb|FL125776.1|FL125776
EST:     CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA                         GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
genomic: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
EST: gi|76920585|gb|DV168249.1|DV168249
EST:     CTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA                         GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
genomic: CTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
EST: gi|31355627|gb|CD439984.1|CD439984
EST:     CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA                         GTACCACAGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
genomic: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
EST: gi|32851376|gb|CD991057.1|CD991057
EST:     CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA                         GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
genomic: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
EST: gi|71328227|gb|DR800747.1|DR800747
EST:     CCAGGCTGGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA                         GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
genomic: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
EST: gi|78124352|gb|DV542736.1|DV542736
EST:     CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA                         GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
genomic: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
EST: gi|60346412|gb|DN213385.1|DN213385
EST:     CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA                         GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
genomic: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
EST: gi|148946153|gb|EC891447.2|EC891447
EST:     TTGGGAAAAGCTTCA                         GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
genomic: TTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
EST: gi|86465953|gb|DY232326.1|DY232326
EST:     CCAGGCTTGGGAGACTATACCTCTTGGACCTTT-CTTTGGAAAAGCTTCA                         GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
genomic: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA