Sequence
atgc intronic sequence ATGC exonic sequenceGACATATTACGGTTTCATGCAGTTTATTGGCCAGCCATGTTAATGTCAGCAGGTTTAAGTGTTCCTGATACAGTTTTTGGTCATGGATTCTTGACTAAGgtgatcttacttatttacaagtgtacttgtttccacttctacatccctgatgatagtatggcactctaccataagtaaaaataatgagggcagtagcaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G029055_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g11120.1 (Oryza sativa), 5'ss of exon 7
GACATATTACGGTTTCATGCAGTTTATTGGCCAGCCATGTTAATGTCAGCAGGTTTAAGTGTTCCTGATACAGTTTTTGGTCATGGATTCTTGACTAAGgtgatcttacttatttacaagtgtacttgtttccacttctacatccctgatgatagtatggcactctaccataagtaaa-aataatgagggcagtagcaat-
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GACATATTGCGGTTTCATGCAGTATATTGGCCAGCAATGTTAATGTCAGCAGGAATAAGTGTTCCTGATGCAGTTTTTGGTCATGGATTTTTGACAAAGgtgatcctacctattttcat-cgttattatttccatttctacagatc-gatgacagcatagcactgtaccataagtaaacagtaatggaacctgtttttcct
upper sequence: GRMZM2G029055_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 7
GACATATTACGGTTTCATGCAGTTTATTGGCCAGCCATGTTAATGTCAGCAGGTTTAAGTGTTCCTGATACAGTTTTTGGTCATGGATTCTTGACTAAGgtgatcttacttatttacaagtgtacttgtttccacttctacatccctgatgatagtatggcactctaccataagtaaaaataatgagggcagtagcaat---
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GATATTTTACGTTTTCATGCAGTTTACTGGCCGGCTATGTTATTGTCAGCCGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAAgt-attcgactcaat-atggttatctttgtatt-gtttatttatttatttttatagaacatgagcattataatattaaatatgctcttcttttaacctaaataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32942377|gb|CF047196.1|CF047196EST: CTGATACAGTTTTTGGTCATGGATTCTTGACTAAG GATGGCATGAAGATGGGAAAGTCACTAGGCAACACACTTGAACCAAAAGAT
genomic: CTGATACAGTTTTTGGTCATGGATTCTTGACTAAGgtgatcttac ... aaaattctagGATGGCATGAAGATGGGAAAGTCACTAGGCAACACACTTGAACCAAAAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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GACATATTACGGTTTCATGCAGTTTATTGGCCAGCCATGTTAATGTCAGCAGGTTTAAGTGTTCCTGATACAGTTTTTGGTCATGGATTCTTGACTAAGgtgatcttacttatttacaagtgtacttgtttccacttctacatccctgatgatagtatggcactctaccataagtaaaaataatgagggcagtagcaat
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