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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCTTCGCTACTGCTAAGAAGATTGGGGCCACTGGGTTGCGAGGAAGATCTTGGCCAGACTTAGACATGCTTCCATTTGGATGGCTTACTGATCCAAgtatgatttaactctacgttaagaaataaaattaatcttgattgttgtctggatctaatgacttttaacattgaataaaattttcacaatattcaggaga...

Basic information

species Zea mays
transcript GRMZM2G028307_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028307_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g33420.1 (Oryza sativa), 5'ss of exon 7
TTCCTTCGCTACTGCTAAGAAGATTGGGGCCACTGGGTTGCGAGGAAGATCTTGGCCAGACTTAGACATGCTTCCATTTGGATGGCTTACTGATCCAAgta-tgattt--aactctacgttaagaaataaaattaatcttgattgttgtctggatctaatgacttttaacat-tgaataaaattttcacaatattcaggaga
|||||| ||| |||| || || ||||||||||  || || |||||||||||||||||||| ||||||||||| |||||||| ||||||||  || || ||| | ||||  |  | | | |||  || |    ||  ||||||       ||  | ||  | |   |  | |  | | | | ||    | |||||| || |  
TTCCTTTGCTGCTGCAAATAAAATTGGGGCCATAGGATTACGAGGAAGATCTTGGCCAGATTTAGACATGCTCCCATTTGGCTGGCTTACAAATGCAGgtaattatttgcagtttttctttagaaagtg---tttgtcttgacatgcccctctaactgttcagcatagataaatcacttatatgaaaaaaatatt-agaatc

upper sequence: GRMZM2G028307_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA14G05450.1 (Glycine max), 5'ss of exon 7
TTCCTTCGCTACTGCTAAGAAGATTGGGGCCACTGGGTTGCGAGGAAGATCTTGGCCAGACTTAGACATGCTTCCATTTGGATGGCTTACTGATCCAAgtatgatttaactctacgttaagaaataaaattaatcttgattgttgtctggatctaatgacttttaacattgaataaaattttca--caatattcaggaga-
    || ||| |  ||||    || || |  |  || ||    |||| ||||||||| || || |||||||| |||||||||||||| ||||||||| || |    ||| |   | |  |  | ||   ||   ||| |||  | |  ||  | |   | ||     |||  | | | ||  ||    | || ||    | 
AGATTTTGCTGCATCTAATTTAATAGGAGGAAAAGGTTTAAAGGGAAAATCTTGGCCTGATTTGGACATGCTGCCATTTGGATGGCTAACTGATCCAGgt-tagcctaaatgcccctgcattactacttttttccttaatt--tattagggccaagctagttaaggtattctaaacagttcccaatttacatccaatgcaa

upper sequence: GRMZM2G028307_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA08G13960.1 (Glycine max), 5'ss of exon 7
TTCCTTCGCTACTGCTAAGAAGATTGGGGCCACTGGGTTGCGAGGAAGATCTTGGCCAGACTTAGACATGCTTCCATTTGGATGGCTTACTGATCCAAgtatgatttaactctacgttaagaaataaaattaatcttgattgttgtctggatctaatgacttttaacattgaataaaattttcacaatattcaggaga-----
    ||  |||| ||||| | ||| || |  |  || |||   ||||  || ||||| || || |||||||| |||||||||||||| ||||||||| |||  ||  ||||   |    |    |  | ||   | |  |   ||||   |||   | |   | | ||| || |    | ||    ||||  | |        
GGATTTTTCTACAGCTAATATGATAGGAGGGAAAGGTTTGAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAGgta--atgaaactgggctgctacttttttatttgcccattttgaatgtcataatcc--tcatactgagcat-gagttggttattacttatatgtatgtattgatc

upper sequence: GRMZM2G028307_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA05G30770.1 (Glycine max), 5'ss of exon 8
TTCCTTCGCTACTGCTAAGAAGATTGGGGCCACTGGGTTGCGAGGAAGATCTTGGCCAGACTTAGACATGCTTCCATTTGGATGGCTTACTGATCCAAgtatgatttaactctacgttaagaaataaaattaatcttgattgttgtctggatctaatgacttttaaca--ttgaataaaattttcacaatattcaggaga-
    ||  |||| ||||| | ||| || |  |  || ||    ||||  || ||||| || || |||||||| |||||||||||||| ||||||||| |||  ||   |||   |    |    |  | ||  || | ||   ||||   | |     ||| |  |    |||  ||  | ||  |   |||  |      
GGATTTTTCTACAGCTAATATGATAGGAGGAAAAGGTTTAAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAGgta--atgagactgggctgctactttttcatttgctcattatgaatgtcataaccctcatactgtggatgagttgtttattacttatatg-tatgtattgatc

upper sequence: GRMZM2G028307_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA02G43530.1 (Glycine max), 5'ss of exon 6
TTCCTTCGCTACTGCTAAGAAGATTGGGGCCACTGGGTTGCGAGGAAGATCTTGGCCAGACTTAGACATGCTTCCATTTGGATGGCTTACTGATCCAAgtatgatttaactctacgttaagaaataaaattaatcttgattgttgtctggatctaatgacttttaa-cattgaataaaattttcacaatattcaggaga----
   ||| ||| |  ||||   ||| || |  |  || ||    |||| ||| ||||| || || |||||||| |||||||||||||| ||||||||| ||  |  | ||  |  |   |  |  |    ||   ||| | | |    | | || |||||  ||    || |   ||| |||  || ||   |  |        
AGACTTTGCTGCATCTAATTTGATAGGAGGAAAAGGTTTAAAGGGAAAATCATGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAGgttagcctaaatgcccctgcattacttc---ttttcctttaatttaaattagttccaatgaggttggttcagttggtaagatt--cataactctttgctttttta