Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGTTAGTGGTGATAGAGAAGTGCAAAGGACAATGTTGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattcaacctcaaacctattagttattacagtcttgatgctttgtctcaggttttgttcagttgcaggttgagaaggtataaagttacctctattgatcatgatatgagagatagatgaactgatattttttcccaatgtcttatttaatatctggtgtactaaacgtttgattgttgtgtggcttacag

Basic information

species Zea mays
transcript GRMZM2G027282_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g56000.2 (Oryza sativa), 5'ss of exon 7
TGAAGTTAGTGGTGATAGAGAAGTGCAAAGGACAATGTTGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattcaacctcaaacctattagttattacagtcttgatgctttgtctcaggttttgttcagttgcaggttgagaaggtataaagttacctctattgatcatgatatgagagatagatgaactgatattttttcccaatgtcttatttaatatctggtgtactaaacgtttgattgttgtgtggcttacag
||||||||||||||| |||||||||||  | ||||||||||| |||||||| ||||| |||||||| || || || |||||||||||||||||||||     |      | |||  | | |   | |  |  || |    ||    |||| ||     | | |||   || | ||| |    |  | |  |||                                                                                          
TGAAGTTAGTGGTGACAGAGAAGTGCAGCGCACAATGTTGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcatttttatttg--tttcttaagtctgaatatttgcaaactgtaaaccattcattgt-catcgttatgatgatttggcacaaaatggttttgaat--tca------------------------------------------------------------------------------------------

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 7
TGAAGTTAGTGGTGATAGAGAAGTGCAAAGGACAATGTTGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattcaacctcaaacctattagttattacagtcttgatgctttgtctcaggttttgttcagttgcaggttgagaaggtataaagttacctctattgatcatgatatgagagatagatgaactgatattttttcccaatgtcttatttaatatctggtgtactaaacgtttgattgttgtgtggcttacag
|||||| ||||| || ||||| || ||| | || ||||| |||||||| || ||||||||||| |||||||| |||||  |||| |||||  |  || ||       | | |||  ||| |   | ||     | ||  | |  || | |     |||   || |||   |      || | |   |||   |    || | || |                                                                             
TGAAGTAAGTGGAGACAGAGAGGTACAACGAACTATGTTAGAATTGCTTAATCAGCTTGATGGTTTTAGCAGTGATGACCGGATCAAGgtttgtctttaatt-----cttgttatctat-atgttttt-----tctgattgacattatataagtatgc---ttcagagaat-----tttgctttctttgggtaaagcataatagttt----------------------------------------------------------------------------

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA20G38030.1 (Glycine max), 5'ss of exon 7
TGAAGTTAGTGGTGATAGAGAAGTGCAAAGGACAATGTTGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattcaacctcaaacctattagttattacagtcttgatgctttg---tctcaggttttgttcagttgcaggttgagaaggtataaagttacctctattgatcatgatatgagagatagatgaactgatattttttcccaatgtcttatttaatatctggtgtactaaacgtttgattgttgtgtggcttacag
|||||| ||||| || ||||| || ||| |||||||||| |||||||| || ||||||||||| |||||||| |||||  |||| |||||  |  || ||     |   | |   || ||      ||||||   |    |   | || || ||| ||    || | |     ||||   |||  | |                                                                                                  
TGAAGTAAGTGGAGACAGAGAGGTCCAACGGACAATGTTAGAATTGCTTAATCAGCTTGATGGTTTTAGCAGTGATGACCGGATTAAGgtttgtctttaattcttattatctatatttttgtctgattgatgagataagcttcaaagtatttttctgtctttgggtaaagcattatagt-ttatatttt-------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT1G09100.1 (Arabidopsis thaliana), 5'ss of exon 7
TGAAGTTAGTGGTGATAGAGAAGTGCAAAGGACAATGTTGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattcaacctcaaacctattagttattacagtcttgatgctttgtctcaggttttgttcagttgcaggttgagaaggtataaagttacctctattgatcatgatatgagagatagatgaactgatattttttcccaatgtcttatttaatatctggtgtactaaacgtttgattgttgtgtggcttacag
 ||||||||||| ||  | || || |||||||||||||||||  |||| ||||||||||||||||| |||||||||||  | || |||||    |  |  | |   |||       |   |  ||||   |  || ||   |||  |     | |   |  || | ||  | ||                                                                                                             
CGAAGTTAGTGGAGACCGTGAGGTACAAAGGACAATGTTGGAGCTGCTCAACCAGCTTGATGGATTCAGCAGCGATGATCGCATTAAGgttgttacccctcatattaccc-----ctgcaaatgtctatttatttagtgaaaggcatgaaaaactcataattttacaaact-tag------------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 8
TGAAGTTAGTGGTGATAGAGAAGTGCAAAGGACAATGTTGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtca-gcattcaacctcaaacctattagttattacagtcttgatgctttgtctcaggttttgttcagttgcaggttgagaaggtataaagttacctctattgatcatgatatgagagatagatgaactgatattttttcccaatgtcttatttaatatctggtgtactaaacgtttgattgttgtgtggcttacag
||| || ||||| ||||||||||||||  | ||||||||||||||||| || ||||||||||| ||||| || |||||  | |||||||| | | ||||   | ||    || |||     || |    ||   | ||   | || | | |     | |        |   | ||   ||      | |    | | | |                                                                                    
TGAGGTGAGTGGAGATAGAGAAGTGCAGCGAACAATGTTGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAGgtaatgtattctgac-catttttaatagcgggcactg----gaccatgtgctcctggctatataatacttcc-------ataatgtagtattgggctcacttgcaacgctgt------------------------------------------------------------------------------------

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 7
TGAAGTTAGTGGTGATAGAGAAGTGCAAAGGACAATGTTGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattcaacctcaaacctatta----gttattacagtcttgatgctttgtctcaggttttgttcagttgcaggttgagaaggtataaagttacctctattgatcatgatatgagagatagatgaactgatattttttcccaatgtcttatttaatatctggtgtactaaacgtttgattgttgtgtggcttacag
|||||| ||||| ||||| || |||||  ||||||||||||| ||  |||| ||||||||||| |||||||| |||||  | ||||||||    |||       |||   ||||    | | ||     | | ||  | || |||| ||     | | ||     ||| |  ||  |    |  || ||                                                                                                  
TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttt-tattgttttctaaattcattactgcgcttttttccacctcattttctggctcaagtccccatgaatt--catttgtgttggattctgctatccactgc------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67022292|gb|CO451041.1|CO451041
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|211381567|gb|FL475794.1|FL475794
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|20802484|gb|BQ293534.1|BQ293534
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|211086754|gb|FL006906.1|FL006906
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGARA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|61118362|gb|DN559323.1|DN559323
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|60397914|gb|DN230730.1|DN230730
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|22552518|gb|BU102357.1|BU102357
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|32851366|gb|CD991047.1|CD991047
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|37400681|gb|CF637697.1|CF637697
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCCGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|61118361|gb|DN559322.1|DN559322
EST:     TGGAATTGCTGAATCAGCTCGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|5917528|gb|AW054331.1|AW054331
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTACCAGCGATGAGAGGATAAAG                         GTGATAGCTGCACCAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|31357355|gb|CD441712.1|CD441712
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|31356703|gb|CD441060.1|CD441060
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|109637342|gb|EC590887.1|EC590887
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|20336842|gb|BQ172472.1|BQ172472
EST:     TGGAATTGCTGGATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|88758537|gb|DY542906.1|DY542906
EST:     TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|5456459|gb|AI834149.1|AI834149
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|78543926|gb|DV621424.1|DV621424
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|78544181|gb|DV621679.1|DV621679
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|6827952|gb|AW331595.1|AW331595
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|32851382|gb|CD991063.1|CD991063
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|211086756|gb|FL006908.1|FL006908
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|5124040|gb|AI745881.1|AI745881
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|18385053|gb|BM418252.1|BM418252
EST:     TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|4885759|gb|AI676879.1|AI676879
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|6563657|gb|AW231384.1|AW231384
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|37401285|gb|CF638005.1|CF638005
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGA-AAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|17970176|gb|BM276941.1|BM276941
EST:     TGAACCAGC-TGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCG-GCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|31355810|gb|CD440167.1|CD440167
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|83278765|gb|DV942773.1|DV942773
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|20208457|gb|BQ134546.1|BQ134546
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
EST: gi|60352075|gb|DN219048.1|DN219048
EST:     TGGAATTGCTGAATCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAG                         GTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA
genomic: TGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattc ... tggcttacagGTGATAGCTGCAACAAATCGTGCTGATATTCTTGATCCTGCTCTGATGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAAGTTAGTGGTGATAGAGAAGTGCAAAGGACAATGTTGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattcaacctcaaacctattagttattacagtcttgatgctttgtctcaggttttgttcagttgcaggttgagaaggtataaagttacctctattgatcatgatatgagagatagatgaactgatattttttcccaatgtcttatttaatatctggtgtactaaacgtttgattgttgtgtggcttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT