1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTTTCTCCCATGGGAGAAGCTTGTTCCAGAATGGACCTTACTGCCATCTATCAGATCCTATTCACAACGCATTACCGAGATGATGAAGGGAGCAATGAGgtaaaataaaccagtgcactctggttccaatcttcatgttctgtaggacctctgaaaccagcatcattctccattctgcag
species | Zea mays |
transcript | GRMZM2G026767_T03 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATCAGATCCTATTCACAACGCATTACCGAGATGATGAAGGGAGCAATGAG CTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGGEST: gi|32795968|gb|CD948204.1|CD948204
genomic: ATCAGATCCTATTCACAACGCATTACCGAGATGATGAAGGGAGCAATGAGgtaaaataaa ... cattctgcagCTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGG
EST: GATCCTATTCACAACGCATTACCGAGATGATGAAGGGAGCAATGAG CTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGGEST: gi|32846920|gb|CD986601.1|CD986601
genomic: GATCCTATTCACAACGCATTACCGAGATGATGAAGGGAGCAATGAGgtaaaataaa ... cattctgcagCTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGG
EST: ATCAGATCCTATTCACAACGCATTACCGAGATGATGAAGGGAGCAATGAG CTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGG
genomic: ATCAGATCCTATTCACAACGCATTACCGAGATGATGAAGGGAGCAATGAGgtaaaataaa ... cattctgcagCTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTTCTCCCATGGGAGAAGCTTGTTCCAGAATGGACCTTACTGCCATCTATCAGATCCTATTCACAACGCATTACCGAGATGATGAAGGGAGCAATGAGgtaaaataaaccagtgcactctggttccaatcttcatgttctgtaggacctctgaaaccagcatcattctccattctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA