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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGACACAGCAGATGAGGGATATGCTGGATGCAAGGAAACGTGGCGACTCTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAGgtgggcatgtgcttcttgttcatgaaaagctatttaaaagtgctcccccgccccccagatatatcactcaaatgtagctgtagagagcggggtaatttggtttattttatttacctacctacaatgggacactccaatgtagctgattcttctttccccgtgtttgttgcacag

Basic information

species Zea mays
transcript GRMZM2G026767_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026767_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os10g39670.1 (Oryza sativa), 5'ss of exon 8
ATGGACACAGCAGATGAGGGATATGCTGGATGCAAGGAAACGTGGCGACTCTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAGgtgggca--tgtgcttcttgttcatgaaaagctatttaaaagtgctcccccgccccccagatatatcactcaa-atgtagctgtagagagcggggtaatttggtttattttatttacctacctacaatgggacactccaatgtagctgattcttctttccccgtgtttgttgcacag
|||||| || |||||||| |||||| ||||||| ||||||||||| || | ||| ||   ||||||| |||| |||  ||| || ||||| || |||||||| ||    |||  |  || ||| | |        | |  ||  || |   |  |   | |  || ||||    |||||| |  |   | |       | || |   | | |||| ||| | |  ||            || |   || || || |||| | |              
ATGGACTCAACAGATGAGAGATATGTTGGATGCTAGGAAACGTGGTGATTTTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAGgtaggaggctgtattatttcttcttta--------tcatgagaccttcaatgttct--aaaattaccacttttcatgtagtt-cattcatcc------tctgctcgttatcattttccttcttgaaac-----------atctgcatggttattgtttcacag--------------

upper sequence: GRMZM2G026767_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 6
ATGGACACAGCAGATGAGGGATATGCTGGATGCAAGGAAACGTGGCGACTCTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAGgtgggcat--gtgcttcttgttcatgaaaagctatttaaaagtgctcccccgccccccagatatatcactcaaatgtagctgtagagagcggggtaatttggtttattttatttacctacctacaatgggacactccaatgtagctgattcttctttccccgtgtttgttgcacag
 ||||| || |||||||| ||||||||||| |||||||| ||||| |||| ||| |||   ||||| || |||||| |||| || |||  |||| | ||||||    |  |  ||| ||   |||   ||  ||||  |   |        || | | |  ||| |     | |||   ||| |  |   |   |   ||  |  |                                                                      
GTGGACTCAACAGATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAGgtgcaattcagcacttgtttgacattgtaaattattgtagctttgctatgagcacgctaattattttg---agatgcttctgcattgtttgttattcattcatgcag---------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149098699|gb|EE184711.2|EE184711
EST:     CTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAG                         TTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGC
genomic: CTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAGgtgggcatgt ... tgttgcacagTTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGC
EST: gi|32944385|gb|CF049204.1|CF049204
EST:     CTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAG                         TTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGC
genomic: CTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAGgtgggcatgt ... tgttgcacagTTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGC
EST: gi|32846920|gb|CD986601.1|CD986601
EST:     CTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAG                         TTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAAACGAAGC
genomic: CTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAGgtgggcatgt ... tgttgcacagTTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGC
EST: gi|60395071|gb|DN227940.1|DN227940
EST:     CTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAG                         TTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGC
genomic: CTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAGgtgggcatgt ... tgttgcacagTTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGC