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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTTTGGGGCCAGGCGGTGGCTTGCAATGCTGCAGCGCCAGTGCGAATGCCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAGgtacagcaaagtctgaacttttttgttgctattttccatgtacagcctgtaatggactgtgcctacatatatagtcagtgcaaacgattttttttttgtt...

Basic information

species Zea mays
transcript GRMZM2G026643_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026643_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g45250.1 (Oryza sativa), 5'ss of exon 7
GCCTTTGGGGCCAGGCGGTGGCTTGCAATGCTGCAGCGCCAGTGCGAATGCCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAGgtacagcaaagtctgaacttttttgttgctattttccatgtacagcctg--taatggactgtgcctac-atatatagtcagtgcaaacgattttttttttgtt
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GCCTTTGGCGCCAGGCGTTGGCTTGCGACGCTGCAGCGCCAATGCGAATGCCTTGCCATCCTCATGTCCTCTGCTACAGTGACAGCAAATGACTCGACTGgtacaggaaattctgaacctctac-ttgccattttccatctaaaacgagctcaatttgcggaatcaactgtgcgcaaattttgcatg-gaattcatttcggt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211022959|gb|FL081008.1|FL081008
EST:     CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAG                         TCATAACACAGGAGGGCAAGCGAAG
genomic: CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAGgtacagcaaa ... tcgggtgcagTCATAACACAGGAGGGCAAGCGAAG
EST: gi|211022958|gb|FL081007.1|FL081007
EST:     CCTGGNCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAG                         TCATAACACAGGAGGGCAAGCGAAACATGCTGAAGCT
genomic: CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAGgtacagcaaa ... tcgggtgcagTCATAACACAGGAGGGCAAGCGAAGCATGCTGAAGCT
EST: gi|211462300|gb|FL096434.1|FL096434
EST:     CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAG                         TCATAACACAGGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGGCGGATGA
genomic: CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAGgtacagcaaa ... tcgggtgcagTCATAACACAGGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGGCGGATGA
EST: gi|76929403|gb|DV172000.1|DV172000
EST:     CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAG                         TCATAACACAGGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGGCGGATGA
genomic: CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAGgtacagcaaa ... tcgggtgcagTCATAACACAGGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGGCGGATGA
EST: gi|211022951|gb|FL081000.1|FL081000
EST:     CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAG                         TCATAACACAGGAGGGGCAAGCGAAGCATGCTGAAGCTGG
genomic: CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAGgtacagcaaa ... tcgggtgcagTCATAACACAGGAGGG-CAAGCGAAGCATGCTGAAGCTGG
EST: gi|74245648|gb|DT653562.1|DT653562
EST:     CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAG                         TCATAACACAGGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGGCGGATGA
genomic: CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAGgtacagcaaa ... tcgggtgcagTCATAACACAGGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGGCGGATGA
EST: gi|71437534|gb|DR818584.1|DR818584
EST:     CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAG                         TCATAACACAGGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGGCGGATGA
genomic: CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAGgtacagcaaa ... tcgggtgcagTCATAACACAGGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGGCGGATGA
EST: gi|211022954|gb|FL081003.1|FL081003
EST:     CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAG                         TCATAACACAGGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGGCGGATGA
genomic: CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAGgtacagcaaa ... tcgggtgcagTCATAACACAGGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGGCGGATGA
EST: gi|50333151|gb|CO528277.1|CO528277
EST:     CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAG                         TCATAACACAGGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGGCGGATGA
genomic: CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAGgtacagcaaa ... tcgggtgcagTCATAACACAGGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGGCGGATGA
EST: gi|211462299|gb|FL096433.1|FL096433
EST:     CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAG                         TCATAACACAGGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGGCGGATGA
genomic: CCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAGgtacagcaaa ... tcgggtgcagTCATAACACAGGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGGCGGATGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCTTTGGGGCCAGGCGGTGGCTTGCAATGCTGCAGCGCCAGTGCGAATGCCTGGCCATACTCATGTCCCCTGATACAGTTTCAGCTAATGACTCGTCAGgtacagcaaagtctgaacttttttgttgctattttccatgtacagcctgtaatggactgtgcctacatatatagtcagtgcaaacgattttttttttgtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT