1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTAGTGGCACTGCGGTGTGTTGATCCGGACTCTGAGAAAAGACCCACTATGGGGCAGGTTGTCCGGATGCTCGAGGCAGAAGATGTCCCGTCACGGGAGgttgtacttctgctcccccctccccccctcctgatacaaacatactgctcttttgtgtaacaagtctgaatcttgtgttttgatcctgtgaag
species | Zea mays |
transcript | GRMZM2G026301_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGGGGCAGGTTGTCCGGATGCTCGAGGCAGAAGATGTCCCGTCACGGGAG GACCGCCGGAGCCGGAGGGGCCACAGCGGTAACGCAGACAGCGAGTCTAAGEST: gi|26456560|gb|CA828143.1|CA828143
genomic: TGGGGCAGGTTGTCCGGATGCTCGAGGCAGAAGATGTCCCGTCACGGGAGgttgtacttc ... tcctgtgaagGACCGCCGGAGCCGGAGGGGCCACAGCGGTAACGCAGACAGCGAGTCTAAG
EST: GGGGCAGGTTGTCCGGATGCTCGAGGCAGAAGAATGTCCCGTCACGGGAG GACCGCCGGAGCCGGAGGGGCCACAGCGGTAACGCAGACAGCGAGTCTAAGEST: gi|30306823|gb|CD001496.1|CD001496
genomic: GGGGCAGGTTGTCCGGATGCTCGAGGCAGAAGA-TGTCCCGTCACGGGAGgttgtacttc ... tcctgtgaagGACCGCCGGAGCCGGAGGGGCCACAGCGGTAACGCAGACAGCGAGTCTAAG
EST: TGGGGCAGG-TGTCCGGATGCTCGAGGCAGAAGATGTCCCG-CACGGGAG GACCGCCGGAGCCGGAGGGGCCACAGCGGTAACGCAGEST: gi|20803185|gb|BQ294235.1|BQ294235
genomic: TGGGGCAGGTTGTCCGGATGCTCGAGGCAGAAGATGTCCCGTCACGGGAGgttgtacttc ... tcctgtgaagGACCGCCGGAGCCGGAGGGGCCACAGCGGTAACGCAG
EST: TGGGGCAGGTTGTCCGGATGCTCGAGGCAGAAGATGTCCCGTCACGGGAG GACCGCCGGAGCCGGAGGGGCCACAGCGGTAACGCAGACAGCGAGTCTAAG
genomic: TGGGGCAGGTTGTCCGGATGCTCGAGGCAGAAGATGTCCCGTCACGGGAGgttgtacttc ... tcctgtgaagGACCGCCGGAGCCGGAGGGGCCACAGCGGTAACGCAGACAGCGAGTCTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTAGTGGCACTGCGGTGTGTTGATCCGGACTCTGAGAAAAGACCCACTATGGGGCAGGTTGTCCGGATGCTCGAGGCAGAAGATGTCCCGTCACGGGAGgttgtacttctgctcccccctccccccctcctgatacaaacatactgctcttttgtgtaacaagtctgaatcttgtgttttgatcctgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG