1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATCACAGCGTCAGGAGATCCAAGAGCTGAAGCGCACCCTTGCTGAGGCAACGCCTCCCTCAAACAAAGTCAGCTCAAGGACACAAGACTCTGGATCTCAGgtgattaacctacacctatgtctaacgcaacatatttcactgtcctgaagtttattaatatcttacataaggtttataattcatgcag
species | Zea mays |
transcript | GRMZM2G026043_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAAACAAAGTCAGCTCAAGGACACAAGACTCTGGATCTCAG CGAAAGGAAAAGATCCAAGGAACCTTGTGGGAGCTTGAACAAGGGATGCTTEST: gi|71301414|gb|DR786739.1|DR786739
genomic: CAAACAAAGTCAGCTCAAGGACACAAGACTCTGGATCTCAGgtgattaacc ... attcatgcagCGAAAGGAAAAGATCCAAGGAACCTTGTGGGAGCTTGAACAAGGGATGCTT
EST: CGCCTCCCTCAAACAAAGTCAGCTCAAGGACACAAGACTCTGGATCTCAG CGAAAGGAAAAGATCCAAGGAACCTTGTGGGAGCTTGAACAAGGGATGCTTEST: gi|83278885|gb|DV942893.1|DV942893
genomic: CGCCTCCCTCAAACAAAGTCAGCTCAAGGACACAAGACTCTGGATCTCAGgtgattaacc ... attcatgcagCGAAAGGAAAAGATCCAAGGAACCTTGTGGGAGCTTGAACAAGGGATGCTT
EST: CAAGGACACAAGACTCTGGATCTCAG CGAAAGGAAAAGATCCAAGGAACCTTGTGGGAGCTTGAACAAGGGATGCTTEST: gi|71301413|gb|DR786738.1|DR786738
genomic: CAAGGACACAAGACTCTGGATCTCAGgtgattaacc ... attcatgcagCGAAAGGAAAAGATCCAAGGAACCTTGTGGGAGCTTGAACAAGGGATGCTT
EST: CCTCAAACAAAGTCAGCTCAAGGACACAAGACTCTGGATCTCAG CGAAAGGAAAAGATCCAAGGAACCTTGTGGGAGCTTGAACAAGGGATGCTTEST: gi|60355911|gb|DN222884.1|DN222884
genomic: CCTCAAACAAAGTCAGCTCAAGGACACAAGACTCTGGATCTCAGgtgattaacc ... attcatgcagCGAAAGGAAAAGATCCAAGGAACCTTGTGGGAGCTTGAACAAGGGATGCTT
EST: CAAACAAAGTCAGCTCAAGGACACAAGACTCTGGATCTCAG CGAAAGGAAAAGATCCAAGGAACCTTGTGGGAGCTTGAACAAGGGATGCTTEST: gi|71332998|gb|DR803526.1|DR803526
genomic: CAAACAAAGTCAGCTCAAGGACACAAGACTCTGGATCTCAGgtgattaacc ... attcatgcagCGAAAGGAAAAGATCCAAGGAACCTTGTGGGAGCTTGAACAAGGGATGCTT
EST: CGCCTCCCTCAAACAAAGTCAGCTCAAGGACACAAGACTCTGGATCTCAG CGAAAGGAAAAGATCCAAGGAACCTTGTGGGAGCTTGAACAAGGGATGCTT
genomic: CGCCTCCCTCAAACAAAGTCAGCTCAAGGACACAAGACTCTGGATCTCAGgtgattaacc ... attcatgcagCGAAAGGAAAAGATCCAAGGAACCTTGTGGGAGCTTGAACAAGGGATGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCACAGCGTCAGGAGATCCAAGAGCTGAAGCGCACCCTTGCTGAGGCAACGCCTCCCTCAAACAAAGTCAGCTCAAGGACACAAGACTCTGGATCTCAGgtgattaacctacacctatgtctaacgcaacatatttcactgtcctgaagtttattaatatcttacataaggtttataattcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA