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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACCGATAAACATTTGAACCTTCCATCCACCCTGGCTTCGTTCAGCAACTTCTTGTTGGGTGAGATATTTTCTCAGgtcagcaagcatcatgtcaaccgaattttaaccctatagccgttttggttttgcattcatccagacgtaactccttcacttgaattgtttcag

Basic information

species Zea mays
transcript GRMZM2G025659_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025659_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g69060.1 (Oryza sativa), 5'ss of exon 10
ATAACCGATAAACATTTGAACCTTCCATCCACCCTGGCTTCGTTCAGCAACTTCTTGTTGGGTGAGATATTTTCTCAGgtcagcaagcatcatgtcaaccgaattttaaccctatagccgttttggttttgcattcatccagacgtaactccttcacttgaattgtttcag
||||| ||||| |||  ||| ||||| |||||||| || |  |||||||| ||||||||||||||||||||||| ||||| |||| ||||  ||| ||  ||| ||  ||  |||     |||| | ||||   |  |  |     || |||||  || ||||   |||||
ATAACGGATAAGCATGCGAAGCTTCCGTCCACCCTTGCATGTTTCAGCAATTTCTTGTTGGGTGAGATATTTTCCCAGgttagcaggcatagtgtgaaatgaacttagacattatgtaactttttggtttgtgctt-tgaaattaaaattccttttctcgaatcccttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148950896|gb|EC896526.2|EC896526
EST:     CCACCCTGGCTTCGTTCAGCAACTTCTTGTTGGGTGAGATATTTTCTCAG                         GATCCTCTCAGAGCTAGTGATAAGGTATTGACTAGTTGTGGTCCATACATG
genomic: CCACCCTGGCTTCGTTCAGCAACTTCTTGTTGGGTGAGATATTTTCTCAGgtcagcaagc ... attgtttcagGATCCTCTCAGAGCTAGTGATAAGGTATTGACTAGTTGTGGTCCATACATG