Sequence
atgc intronic sequence ATGC exonic sequenceATGATGGAGTGGTGGTATCAATCTGCTGAAGAAAGAATGTCAGCTCCGACTGTATATCCACCACCCCCTCCTCCTCCAACTCCTAAGgtacatctcttgactatactcatgccagcacagagctacagccattcatttgtcacaattatagaagcatgaaaccttttagatgttcatgatcataatattttgtggatttgtgccaatctttgctag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G023970_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os10g32960.1 (Oryza sativa), 5'ss of exon 8
ATGATGGAGTGGTGGTATCAATCTGCTGAAGAAAGAATGTCAGCTCCGACTGTATATCCACCACCCCCTCCTCCTCCAACTCCTAAGgtacatctcttgactatactcatgccagcacagagctacagccattcatttg--tcacaatt-atagaagcatga-------aaccttttagatgttcat------gatcataatattttgtggatttgtgccaatctttgctag-----------------------------------
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || || ||||||||| | | || ||| | ||| || || | || ||||| || | |||| ||| ||| | || | | ||||||||||| || | | | | |
ATGATGGAATGGTGGTATCAATCTGCTGAGGAAAGAATGTCAGCTCCGACTGTATATCCCCCACCCCCTCCTCCACCTCTGCCAAAGgtacatgttatatgctagtcaatatatgcagaaagcagttacccttgtctgaaatctcaatttgcagtaacatggtgaacagaactctttgttttgccactgtgcagttggatatattttgtggtttaatagttctttatatgactactgtttgatttgagcgtctacttctttcatcag
upper sequence: GRMZM2G023970_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA19G43700.1 (Glycine max), 5'ss of exon 6
ATGATGGAGTGGTGGTATCAATCTGCTGAAGAAAGAATGTCAGCTCCGACTGTATATCCACCACCCCCTCCTCCTCCAACTCCTAAGgtacat-------ctcttgactatactcatgccagcacagagcta-cagccattcatttgtcacaattatagaagcatgaaaccttttagatgttcatgatcataatattttgtggatttgtgccaatctttgctag
|||||||| |||||||| ||||||||||| || |||||||||||||| || |||||||| || ||||||||||| || | || ||||| | | || ||| | ||| || | | | | || |||| | ||| || | |||| || | || | ||
ATGATGGAATGGTGGTACCAATCTGCTGAGGAGAGAATGTCAGCTCCTACAGTATATCCTCCTCCCCCTCCTCCGCCTCCACCAAAGgtgaagaaacaaatttttaacttttctcccacctctctttctccatcggtagttgttttgactttattttacctgaatgacttattctggacaaata-aat------------------------------------
upper sequence: GRMZM2G023970_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA03G41050.1 (Glycine max), 5'ss of exon 7
ATGATGGAGTGGTGGTATCAATCTGCTGAAGAAAGAATGTCAGCTCCGACTGTATATCCACCACCCCCTCCTCCTCCAACTCCTAAGgtacatctcttgactatactcatgccagcacagagctaca---gccattcatttgtcacaattatagaagcatgaaaccttttagatgttcatgatcataa-tattttgtggatttgtgccaatctttgctag------------------------------------------------------------------
|||||||| |||||||| || ||||| || || |||||||||||||| || |||||||| |||||||||||||||||| | || ||||| | | | | | | ||| || || || || |||| | || || | ||||| || | || | || ||| |||||| || | || | ||
ATGATGGAATGGTGGTACCAGTCTGCCGAGGAGAGAATGTCAGCTCCTACAGTATATCCTCCACCCCCTCCTCCTCCACCACCAAAGgtgaagaagcaaatttaagcttttctcccacctctctccacgggcagttgttttgactttgttttacctgaatgaa-ttttctggacaaata-aattatatctattttcaactttcattgtaaaagcttctttttctttttcactacattttctatgtagtgtcacacactgtcagtaattagaatcttgtacaaacag
upper sequence: GRMZM2G023970_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT3G04460.1 (Arabidopsis thaliana), 5'ss of exon 8
ATGATGGAGTGGTGGTATCAATCTGCTGAAGAAAGAATGTCAGCTCCGACTGTATATCCACCACCCCCTCCTCCTCCAACTCCTAAGgtacatctcttgactatactcatgccagcacagagctacagccattcatttgtcacaattatagaagcatgaaaccttttagatgttcatgatcataatattttgtggatttgtgccaatctttgctag
|||||||| |||||||||||||| |||||||| ||| | |||||||| || || || || ||||| || ||||||||| | || |||||| ||| | || | || | || | | | ||| | ||| || | ||| | || | |
ATGATGGAATGGTGGTATCAATCCGCTGAAGAGAGATTATCAGCTCCAACAGTGTACCCTCCACCTCCACCTCCTCCAGCCCCAAAGgta-atcaatcaggtagcattat-ctgaaactta--tgtaaacatcactcagtcgactttgtcaaagtttttgtttttctgtaacag------------------------------------------
upper sequence: GRMZM2G023970_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv14s0036g01130.t01 (Vitis vinifera), 5'ss of exon 8
ATGATGGAGTGGTGGTATCAATCTGCTGAAGAAAGAATGTCAGCTCCGACTGTATATCCACCACCCCCTCCTCCTCCAACTCCTAAGgta---catctcttgactatact--catgccagcacagagctacagccattcatttgtcacaattatagaagcatgaaaccttttagatgttcatgatcataatattttgtggatttgtgccaatctttgctag
||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| || ||||| ||||| |||||| |||| ||||| ||| |||| | ||| || || | | | | | | || || | | | ||| | | ||||| | | | | | ||| || ||
ATGATGGAGTGGTGGTACCAATCTGCTGAGGAAAGAATGTCAGCTCCAACTGTATACCCCCCACCACCTCCCCCTCCACCTCCAAAGgtgagtcatttctttaatatgcttccaatctatctcttttcctccataatccacctccctccatt-tctatgcatgta---tatcaaactttctatttccctat------------------------------
upper sequence: GRMZM2G023970_T02 (Zea mays), 5'ss of exon 7
lower sequence: PP1S26_47V6.1 (Physcomitrella patens), 5'ss of exon 8
ATGATGGAGTGGTGGTATCAATCTGCTGAAGAAAGAATGTCAGCTCCGACTGTATATCCACCACCCCCTCCTCCTCCAACTCCTAAGgtacatctcttgactatactcatgccagcacagagctacagccat-tcatttgtcacaattatagaagcatgaaaccttttagatgttcatgatcataatattttgtggatttgtgccaatctttgctag
||| |||| |||||||| || ||||| ||||||||| || |||| || |||| ||||| |||||||||||||| || |||| |||| | | || | | || || | || | | | | || | | | || || | | ||| | ||| | || || | ||| || | ||| ||
ATGGTGGAATGGTGGTACCAGTCTGCAGAAGAAAGAGTGACAGCACCTGCTGTTTATCCTCCACCCCCTCCTCCGCCGCCTCCAGTGgtatgttttttttttgcagtc-------caggaatttattgatgtataaagtgggaagtcctctgtggaatcaagctatgaggatat--atgttgatt-taatcagtgtatcgttcttggcattttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60350685|gb|DN217658.1|DN217658EST: ACCCCCTCCTCCTCCAACTCCTAAG GTTGCCAAAGACGGGATTCCGTTGCCACCTGACAGGACGCTCTGCCCCCTG
genomic: ACCCCCTCCTCCTCCAACTCCTAAGgtacatctct ... tctttgctagGTTGCCAAAGACGGGATTCCGTTGCCACCTGACAGGACGCTCTGCCCCCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGATGGAGTGGTGGTATCAATCTGCTGAAGAAAGAATGTCAGCTCCGACTGTATATCCACCACCCCCTCCTCCTCCAACTCCTAAGgtacatctcttgactatactcatgccagcacagagctacagccattcatttgtcacaattatagaagcatgaaaccttttagatgttcatgatcataatattttgtggatttgtgccaatctttgctag
- - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC