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TGGCAGCAAATTGAGGGAGAAAGCTCTGGAAACAGTCATGCAACATGTTCATTATGAAGATGAGAACACTCGTTATATTTGCATTGGTCCTGTAAACAAGgtaaattaaggcctatcattgctcgttgaaccttacaaaaggaggtgtggtcttattttatcctattcttgctgcaagcatctcaaggccatatgctact...
species | Zea mays |
transcript | GRMZM2G023798_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACTATGAAGATGAGAACACTCGTTATATTTGCATTGGTCCTGTAAACAAG GTATTGAATATGCTTGCTTGCTGGATTGAAGATCCAAACTCGGAGGCCTTCEST: gi|23199794|gb|BU582359.1|BU582359
genomic: ATTATGAAGATGAGAACACTCGTTATATTTGCATTGGTCCTGTAAACAAGgtaaattaag ... ttctgtgcagGTATTGAATATGCTTGCTTGCTGGATTGAAGATCCAAACTCGGAGGCCTTC
EST: ACTATGAAGATGAGAACACTCGTTATATTTGCATTGGTCCTGTAAACAAG GTATTGAATATGCTTGCTTGCTGGATTGAAGATCCAAACTCGGAGGCCTTCEST: gi|9733396|gb|BE512253.1|BE512253
genomic: ATTATGAAGATGAGAACACTCGTTATATTTGCATTGGTCCTGTAAACAAGgtaaattaag ... ttctgtgcagGTATTGAATATGCTTGCTTGCTGGATTGAAGATCCAAACTCGGAGGCCTTC
EST: ACTATGAAGATGAGAACACTCGTTATATTTGCATTGGTCCTGTAAACAAG GTATTGAATATGCTTGCTTGCTGGATTGAAGATCCAAACTCGGAGGCCTTCEST: gi|87156285|gb|DY401074.1|DY401074
genomic: ATTATGAAGATGAGAACACTCGTTATATTTGCATTGGTCCTGTAAACAAGgtaaattaag ... ttctgtgcagGTATTGAATATGCTTGCTTGCTGGATTGAAGATCCAAACTCGGAGGCCTTC
EST: ACTATGAAGATGAGAACACTCGTTATATTTGCATTGGTCCTGTAAACAAG GTATTGAATATGCTTGCTTGCTGGATTGAAGATCCAAACTCGGAGGCCTTCEST: gi|26560142|gb|CA832377.1|CA832377
genomic: ATTATGAAGATGAGAACACTCGTTATATTTGCATTGGTCCTGTAAACAAGgtaaattaag ... ttctgtgcagGTATTGAATATGCTTGCTTGCTGGATTGAAGATCCAAACTCGGAGGCCTTC
EST: ACTATGAAGATGAGAACACTCGTTATATTTGCATTGGTCCTGTAAACAAG GTATTGAATATGCTTGCTTGCTGGATTGAAGATCCAAACTCGGAGGCCTTC
genomic: ATTATGAAGATGAGAACACTCGTTATATTTGCATTGGTCCTGTAAACAAGgtaaattaag ... ttctgtgcagGTATTGAATATGCTTGCTTGCTGGATTGAAGATCCAAACTCGGAGGCCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCAGCAAATTGAGGGAGAAAGCTCTGGAAACAGTCATGCAACATGTTCATTATGAAGATGAGAACACTCGTTATATTTGCATTGGTCCTGTAAACAAGgtaaattaaggcctatcattgctcgttgaaccttacaaaaggaggtgtggtcttattttatcctattcttgctgcaagcatctcaaggccatatgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG