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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCTTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAAgtgagtagcttgttctttcctgtttcctttcattgaagtgagaattccatgctttatatcattacttgttacttggatcatgttatgtagcaagggaacctaatgatttaattaccaccatcaatttcag

Basic information

species Zea mays
transcript GRMZM2G023289_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 7
TTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCTTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAAgtgagtagctt--gttc---tttcctgtttcctttcattgaagtgagaattccatgctttat-----atcattacttgttacttggatcatgttatgtagcaa-gggaacctaatgatttaattaccaccatcaatttcag-----
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TCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTTTTGATGTTGATGTTTTTGACTCTACTATAGATTACATAAAGTTAATGAAgtaagttgcttccatttgaatttactgaatgctatttccatatgtattgttcgatgttttcttttcaataagtgaattttccttgtagcttcataagaacctgcgaaaaatgggtgatttaatttgtaatttgtatttaattccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353596|gb|CD437953.1|CD437953
EST:     TTTGATGTGGATGTCTTTGACTCTAGTTTAAATTACATAAAATTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAAgtgagtagct ... tcaatttcagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTT
EST: gi|211538908|gb|FL379332.1|FL379332
EST:     TTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAA                         GACNATTTTTGACTTCGAAGCAATAAAAAAGCTACTGGAC-TCCCCAAAGN
genomic: TTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAAgtgagtagct ... tcaatttcagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTACTG-ACCTCCCCAAAGT
EST: gi|149106401|gb|EE292127.2|EE292127
EST:     TTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTACTGACCTC
genomic: TTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAAgtgagtagct ... tcaatttcagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTACTGACCTC
EST: gi|211079915|gb|FL412204.1|FL412204
EST:     TTTGATGTGGATGTCTTTGACTCTAGTGTAA-TTACATAAAGT-AATGAA                         GACAATTTTTGACT
genomic: TTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAAgtgagtagct ... tcaatttcagGACAATTTTTGACT
EST: gi|67021929|gb|CO450678.1|CO450678
EST:     TTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAA-CAATAAAAAAGCTACTNGACCTCCCCAA-GT
genomic: TTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAAgtgagtagct ... tcaatttcagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTACT-GACCTCCCCAAAGT
EST: gi|211111130|gb|FL394545.1|FL394545
EST:     TTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTA-TGGA                         GACAATTTTTGACTTCGAA
genomic: TTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAAgtgagtagct ... tcaatttcagGACAATTTTTGACTTCGAA
EST: gi|211503690|gb|FL022245.1|FL022245
EST:     TTTGATGNGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAAgtgagtagct ... tcaatttcagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTT
EST: gi|211394811|gb|FL369335.1|FL369335
EST:     TTGGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAA                         A
genomic: TTG-ATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAAgtgagtagct ... tcaatttcag-
EST: gi|211394811|gb|FL369335.1|FL369335
EST:     TTGGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAA                         A
genomic: TTG-ATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAAgtgagtagct ... tcaatttcag-
EST: gi|31356531|gb|CD440888.1|CD440888
EST:     TTTGATGTGGATGTCTTTGACTCTAGTTTAAATTACATAAAATTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCA
genomic: TTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAAgtgagtagct ... tcaatttcagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCA
EST: gi|31354050|gb|CD438407.1|CD438407
EST:     TTTGATGTGGATGTCTTTGACTCTAGTTTAAATTACATAAAATTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAAgtgagtagct ... tcaatttcagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTT
EST: gi|211445226|gb|FL373040.1|FL373040
EST:     TTGATGTGGATGTCTTTGACTCTAGTGTAAATTTACATAA-GT-AATGAA                         GACAATTTTTGAC
genomic: T-GATGTGGATGTCTTTGACTCTAGTGTAAATT-ACATAAAGTTAATGAAgtgagtagct ... tcaatttcagGACAATTTTTGAC
EST: gi|31351485|gb|CD435842.1|CD435842
EST:     TTTGATGTGGATGTCTTTGACTCTAGTTTAAATTACATAAAATTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAAgtgagtagct ... tcaatttcagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTT
EST: gi|149060809|gb|EE157261.2|EE157261
EST:     TTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTCTTTGACTCTAGTGTAAATTACATAAAGTTAATGAAgtgagtagct ... tcaatttcagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTACTGACCTCCCCAAAGTT