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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATGCTGGCAAAAGCGGTCGCTACTGAGTGCAAAACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttttttacacaagtcctggttgcgtcttcacattcttttctgttaccaatgtaattcaactttcagctgtcagttaatgtcatgaaacatatg...

Basic information

species Zea mays
transcript GRMZM2G022777_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022777_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g55260.1 (Oryza sativa), 5'ss of exon 7
ACAATGCTGGCAAAAGCGGTCGCTACTGAGTGCAAAACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttttttacacaagtcctggttgcgtcttca-cattcttttctgttaccaatgtaattcaactttcagctgtcagttaatgtcatgaaacatatg---
|||||||||||||| || || ||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||  || |||  |||   ||||||   | |  || | ||||||| |   ||  |    |      ||| |||| |   ||  |||   |        |   
ACAATGCTGGCAAAGGCTGTTGCTACTGAGTGTAAAACTACATTCTTCAACATTTCAGCATCATCAATTGTTAGCAAATGGCGTGgtatg-tttctttgaaca---cctggtcctgaccccatctttcttttattgcacagaaaacaagttgtttttagctattcttttttgtagagttgtcctagttg

upper sequence: GRMZM2G022777_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT2G34560.1 (Arabidopsis thaliana), 5'ss of exon 7
ACAATGCTGGCAAAAGCGGTCGCTACTGAGTGCAAAACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttttt-tacacaagtcctggttgcgtcttcacattcttttctgttaccaatgtaattcaactttcagctgtcagttaatgtcatgaaacatatg
|| ||||| ||||| || || ||||| |||||||| || || ||||||||||| ||||| |||||  |||| ||||||||| | |||      |||| |||     |      |    | | | ||    | | ||    |    || | || |||  ||| |   | |||||  |  |       
ACTATGCTTGCAAAGGCTGTTGCTACAGAGTGCAATACAACATTCTTCAACATCTCAGCCTCATCTGTTGTTAGCAAATGGAGAGgtgaaatattttgtacctttatttactcttaaccatgaaataagatgcagtctttaggagaaataaaatttgggcttt---tcaatgtttttcag------

upper sequence: GRMZM2G022777_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv10s0003g03500.t01 (Vitis vinifera), 5'ss of exon 7
ACAATGCTGGCAAAAGCGGTCGCTACTGAGTGCAAAACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttttttacacaagtcctggttgcgtcttcacattcttttctgttaccaatg-taattcaactttcagctgtcagttaatgtcatgaaacatatg------
|| ||||| ||||| || ||||| || |||||||||||||| || ||||| ||||| ||||| ||  |||||||||||||||| |||||| |    ||  |  | |      ||     |||  || |||  |  | |   || |  |||||| |  ||||   |     | || |   |  || |      
ACTATGCTTGCAAAGGCTGTCGCAACCGAGTGCAAAACCACATTTTTCAATATTTCTGCATCCTCTGTTGTCAGCAAATGGCGAGgtatgtcagagttgaaagattttctaatga----tcatgttttttgataatgctgttgctcgttcaacct--agctacgaaactgtatcttctgat-taggttctct

upper sequence: GRMZM2G022777_T01 (Zea mays), 5'ss of exon 7
lower sequence: EFJ34591 (Selaginella moellendorffii), 5'ss of exon 3
ACAATGCTGGCAAAAGCGGTCGCTACTGAGTGCAAAACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttttttacacaagtcc-tggttgcgtcttcacattcttttctgttaccaatgtaattcaactttcagctgtcagttaatgtcatgaaacatatg
||  |||| || ||||| || ||||| ||||| || |||||||||||||||||||| || ||  | ||||||||||| |  || ||||      ||         ||  | || |  | ||   |  || |||  |  |||                                             
ACTTTGCTCGCCAAAGCAGTGGCTACAGAGTGTAACACCACCTTCTTCAACATTTCTGCGTCCACCATTGTCAGCAAGTACCGCGgtacaagccttcactttttctctgttgtggtttttttctaaactcttcgctatccag--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76281419|gb|DV020987.1|DV020987
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|91876817|gb|EB406774.1|EB406774
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|78106806|gb|DV525224.1|DV525224
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|149035101|gb|EE155087.2|EE155087
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|211165539|gb|FL456882.1|FL456882
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|78121929|gb|DV540313.1|DV540313
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|32837432|gb|CD977110.1|CD977110
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|148963213|gb|EE014191.2|EE014191
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|71297616|gb|DR784759.1|DR784759
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|32849820|gb|CD989501.1|CD989501
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|78109695|gb|DV528111.1|DV528111
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|76280583|gb|DV020151.1|DV020151
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|149080059|gb|EE169077.2|EE169077
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|67021064|gb|CO449813.1|CO449813
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|148963079|gb|EE014036.2|EE014036
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|32838514|gb|CD978192.1|CD978192
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|31355569|gb|CD439926.1|CD439926
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|76933170|gb|DV173349.1|DV173349
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|148995361|gb|EE034575.2|EE034575
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|31355560|gb|CD439917.1|CD439917
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
EST: gi|211131749|gb|FL468282.1|FL468282
EST:     AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTG                         GAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG
genomic: AACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttt ... gtgagtgcagGAGATTCAGAGAAGCTTGTCAAAGTTCTGTTTGAGCTTGCTAGGCATCATG