Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCCTACCAGCTCGTGGTAAAACCTTCACTGCAGTTAAGCTTACAAGGTACCTTCGTTGGTTGGGCCATGAAACTAGACATTTCAATGTTGGGAAGgtaattatattgttactccgattaactgtcttgcagagttaatgtgtttacttttcttatttgcaaaattaattgagttttcttttgttgaaaatatgtgtgcag

Basic information

species Zea mays
transcript GRMZM2G021846_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os05g07130.1 (Oryza sativa), 5'ss of exon 7
GTTGGCCTACCAGCTCGTGGTAAAACCTTCACTGCAGTTAAGCTTACAAGGTACCTTCGTTGGTTGGGCCATGAAACTAGACATTTCAATGTTGGGAAGgtaattatattgttactccgattaactgtcttgcagagttaatgtgtttacttttcttatttgcaaaattaattgagttttcttttg-ttgaaaatatgtgtgcag
|||||||||||||||||||||||||| || || |||| ||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||| |||||||| ||   | |||||| ||| ||||     |   || | |   |   || ||||  || | ||   |  | ||||||| |||||| |  ||||||||
GTTGGCCTACCAGCTCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgattatattcttttcctgattaattgttttgccacaatggcgtatgt---tggattgtttggcaagtgaacataactctcttttggttgaaactcggtgtgcag

upper sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 9
GTTGGCCTACCAGCTCGTGGTAAAACCTTCACTGCAGTTAAGCTTACAAGGTACCTTCGTTGGTTGGGCCATGAAACTAGACATTTCAATGTTGGGAAGgtaatt-atattgtta-ctccgattaactgtcttgcagagttaatgtgtttactt--ttcttatttgcaaa---attaattgagttttcttttgttgaaaatatgtgtgcag-----------
|| || || ||||| || |||||||| |||||||||| ||| |||||||| || ||||| ||||| || ||| | || | ||| |||||||||||||||||  || | ||| ||| |  |  | | |||| |     |  || |   |  || |  | |  |  || |||    | || |  |   | |   | | ||   |  | |               
GTGGGTCTGCCAGCCCGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgttcacattcttaacatcattcatctgtttaatcaaaata-tacttcgacctagtgcgaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag

upper sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 13
GTTGGCCTACCAGCTCGTGGTAAAACCTTCACTGCAGTTAAGCTTACAAGGTACCTTCGTTGGTTGGGCCATGAAACTAGACATTTCAATGTTGGGAAGgtaatt-atattgtta-ctccgattaactgtcttgcagagttaatgtgtttacttttcttatttgcaaaat--taattgagttttcttttgttgaaaatatgtgtgcag-----------
|| || || |||||  | |||||||| |||||||||| ||| |||||||| || |||| |||||| || ||| | || | ||| |||||||||||||||||  || | ||| ||| |  |  | | |||| |     |  || |  |      |     | | | || ||   || |  |   | |   | | ||   |  | |               
GTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCATTGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgtttacattcttaacatcattcatctgtttaatcaatatacttcgacctagtgcaaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag

upper sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA11G27870.1 (Glycine max), 5'ss of exon 8
GTTGGCCTACCAGCTCGTGGTAAAACCTTCACTGCAGTTAAGCTTACAAGGTACCTTCGTTGGTTGGGCCATGAAACTAGACATTTCAATGTTGGGAAGgtaatt-atattgtta-ctccgattaactgtcttgcagagttaatgtgtttacttttcttatttgcaaaat--taattgagttttcttttgttgaaaatatgtgtgcag-----------
|| || || |||||  | |||||||| |||||||||| ||| |||||||| || ||||||||||| || ||| | || | ||| |||||||||||||||||  || | ||| ||| |  |  | | |||| |     |  || | ||      |     | | | || ||   || |  |   | |   | | ||   |  | |               
GTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCGTTGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgtttacattcttaacatcattcatctgtttaatcaatatactttgacctagtgcaaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag

upper sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
GTTGGCCTACCAGCTCGTGGTAAAACCTTCACTGCAGTTAAGCTTACAAGGTACCTTCGTTGGTTGGGCCATGAAACTAGACATTTCAATGTTGGGAAGgtaatt-atattgttactccgattaactgtcttgcagagttaatgtgtttacttttcttatttgcaaaattaattgagttttcttttgttgaaaatatgtgtgcag
|||||| | |||||||| |||||||| || ||||||| ||| |||||||| || ||||| |||||||| ||||| || | ||| ||||||||||| ||||| ||| ||||| |||        |  | |    || || |       | |   ||    |  | || ||| ||     |||   ||||   |             
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaa-------agttattcatcacagct------ctaatcattgaagtgaggaagattgatatgacttttggttgtaacag------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32840579|gb|CD980260.1|CD980260
EST:     ACCTTCGTTGGTTGGGCCATGAAACTAGACATTTCAATGTTGGGAAG                         TATCGCCGTCTTAAGCTTGGAGCAAATCAG
genomic: ACCTTCGTTGGTTGGGCCATGAAACTAGACATTTCAATGTTGGGAAGgtaattatat ... atgtgtgcagTATCGCCGTCTTAAGCTTGGAGCAAATCAG