Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGATGGAGCCGAGAAGATGGACACAGATGGTGAGAACCAAGAGGGCGGTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccgactccgacctggatactaagaccttgttcgtttacatcggattgcacccggaatcgttccggttaatcaaagtttatataaattagagaa...

Basic information

species Zea mays
transcript GRMZM2G021742_T01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148969289|gb|EE020059.2|EE020059
EST:     GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG                         GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTTTGAGTTAGGTT
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: gi|91053554|gb|EB163972.1|EB163972
EST:     GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG                         GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: gi|50326107|gb|CO521233.1|CO521233
EST:     GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG                         GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTTTGAGTTAGGTT
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: gi|71446950|gb|DR828000.1|DR828000
EST:     GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG                         GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTTTGAGTTAGGTT
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: gi|60356065|gb|DN223038.1|DN223038
EST:     GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG                         GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: gi|76918345|gb|DV167252.1|DV167252
EST:     GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG                         GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTG
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTG
EST: gi|113701906|gb|EE679410.1|EE679410
EST:     CTGATGGGCAGAAACAAGGCGAAGGAAGCACAAGCACCCCAATTCAGGAG                         GATTGAAGGCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTTTAGG
genomic: CTGATGGGCAGAAACAAGGCGAAGGAAGCAC---C-CC--AATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTT--AGG
EST: gi|211242314|gb|FL469535.1|FL469535
EST:     GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG                         GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: gi|71317917|gb|DR795718.1|DR795718
EST:     GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG                         GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: gi|211124519|gb|FL463077.1|FL463077
EST:     CTGATGGGCAGAAACAAGGCGAAGGAAGCACAAGCACCCCAATTCAGGAG                         GATTGAAGGCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTTTAGG
genomic: CTGATGGGCAGAAACAAGGCGAAGGAAGCAC---C-CC--AATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTT--AGG
EST: gi|60356070|gb|DN223043.1|DN223043
EST:     GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG                         GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: gi|31364112|gb|CD448467.1|CD448467
EST:     GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG                         GATTGAAGTCATGGTGACATGGGCTGGGTCATCCACTGTCTGAGTTAGGTT
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: gi|71317919|gb|DR795719.1|DR795719
EST:     GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG                         GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: gi|5650116|gb|AI920476.1|AI920476
EST:     GTGAGGCTGATGGGCAGAAACAAGACGAAGGAAGCACCCCAATTCAGGAG                         GATTGAAGGCATGCTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: gi|78117951|gb|DV536338.1|DV536338
EST:     GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG                         GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCAGATGGAGCCGAGAAGATGGACACAGATGGTGAGAACCAAGAGGGCGGTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccgactccgacctggatactaagaccttgttcgtttacatcggattgcacccggaatcgttccggttaatcaaagtttatataaattagagaa

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA