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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTGGACGTTGCTGGTCAGAAGACTTGCAATCTTTACTTATACAATGGTGTGGCTCTATTTGTTGGATGGCTGgtacaacaactgctctcacgagtcatcaatttcttttaaagaacaaatttctatacagtcataatgcacatggttcaggaaagttgtctctaaatgctag...

Basic information

species Zea mays
transcript GRMZM2G021589_T05
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G021589_T05 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g60120.2 (Oryza sativa), 5'ss of exon 7
GTATTTGGACGTTGCTGGTCAGAAGACTTGCAATCTTTACTTATACAATGGTGTGGCTCTATTTGTTGGATGGCTGgtacaacaactgctctcacgagtcatcaatttcttttaaagaacaaatttcta--tacagtcataatgcacatggttcaggaaagttgtctctaaatgctag
||||||||| ||||||||| |||||||    || |||||||||||||||||  ||||||| ||||| |||||||||||| |||   || |  |  || | |   | ||  |  ||    ||  | ||    | |  |  | |  ||| || || |  ||  ||   |     |||   
GTATTTGGAGGTTGCTGGTAAGAAGACGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTGgtataacccatgatgacttgatttaaataattaatcaaattttcagctctcctattgctcttttgaaacacgtgatttacaaacctttggttggtttgcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22520700|gb|BU079511.1|BU079511
EST:     CTTGCAATCTTTACTTATACAATGGTGTGGCTCTATTTGTTGGATGGCTG                         ATTGCTCGGATAATCTTATTCATATATATGTTCCCCCATATGTATTTTCAT
genomic: CTTGCAATCTTTACTTATACAATGGTGTGGCTCTATTTGTTGGATGGCTGgtacaacaac ... tctgatacagATTGCTCGGATAATCTTATTCATATATATGTTCACCCATATGTATTTTCAT
EST: gi|32944348|gb|CF049167.1|CF049167
EST:     CTTGCGATCTTTACTTATACAATGGTGTGGCTCTATTTGTTGGATGGCTG                         ATTGCTCGGATAATCTTATTCATATATATGTTCACCCATATGTATTTTCAT
genomic: CTTGCAATCTTTACTTATACAATGGTGTGGCTCTATTTGTTGGATGGCTGgtacaacaac ... tctgatacagATTGCTCGGATAATCTTATTCATATATATGTTCACCCATATGTATTTTCAT
EST: gi|13557777|gb|BG549133.1|BG549133
EST:     CTTGCAATCTTTACTTATACAATGGTGTGGCTCTATTTGTTGGATGGCTG                         ATTGCTCGGATAATCTTATTCATATATATGTTCACCCATATGTATTTTCAT
genomic: CTTGCAATCTTTACTTATACAATGGTGTGGCTCTATTTGTTGGATGGCTGgtacaacaac ... tctgatacagATTGCTCGGATAATCTTATTCATATATATGTTCACCCATATGTATTTTCAT
EST: gi|10450892|gb|BE924816.1|BE924816
EST:     CTTGCAATCTTTACTTATCCAATGGTGTGGCTCTATTTGTTGGATGGCTG                         ATTGCTCGGATAATCTTATTCATATATATGTTCACCCATATGTATTTTCAT
genomic: CTTGCAATCTTTACTTATACAATGGTGTGGCTCTATTTGTTGGATGGCTGgtacaacaac ... tctgatacagATTGCTCGGATAATCTTATTCATATATATGTTCACCCATATGTATTTTCAT
EST: gi|16380079|gb|BI993301.1|BI993301
EST:     CTTGCAATCTTTACTTATACAATGGTGTGGCTCTATTTGTTGGATGGCTG                         ATTGCTCGGATAATCTTATTCATATATATGTTCACCCATATGTATTTTCAT
genomic: CTTGCAATCTTTACTTATACAATGGTGTGGCTCTATTTGTTGGATGGCTGgtacaacaac ... tctgatacagATTGCTCGGATAATCTTATTCATATATATGTTCACCCATATGTATTTTCAT