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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACATTAAAGGGTTGCTGATCAACTTCATCCACTCATTCTGGCCGTCTCTTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAGgtagattactgtacgattttatctattgacatatttttatgtattttcaaattttattcttgatagtataccattttgcaccaaagggatttccccctgctagatatgtattttttttgtaaacaatttgttttgactgccatgatggattcacttgtctag

Basic information

species Zea mays
transcript GRMZM2G021270_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G021270_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA15G43170.1 (Glycine max), 5'ss of exon 7
CCACATTAAAGGGTTGCTGATCAACTTCATCCACTCATTCTGGCCGTCTCTTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAGgtagattactgtacgattttatctattgacatatt-tttatgtattttcaaattttattcttgatagtataccattttgcaccaaagggatttccccctgctagatatgtattttttttgtaaacaatttgttttgactgccatgatggattcacttgtctag
|||||| |||||| |  |||| |||||||| || || |||||||| || || || ||||||||||||||| ||||||| || |  ||||| || || | ||||       ||| | |||| | |||   |||  | |||||  |  || |  ||||  | ||  | | || || | |  |  ||                                                                               
CCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTACTAAAAGTTCCATCTTTTATGGTTGAATTTACCACTCCCATAATAAGGgtaa------gtatggttttgt-tatcatcatcctgtttatagaacttgaggttttcatatt--ttgaattccctgtctctgcag------------------------------------------------------------------------------

upper sequence: GRMZM2G021270_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA10G11610.1 (Glycine max), 5'ss of exon 7
CCACATTAAAGGGTTGCTGATCAACTTCATCCACTCATTCTGGCCGTCTCTTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAGgtagattactgtacgattttatctattgacatatttttatgtattttcaaattttattcttgatagtataccattttgcaccaaagggatttccccctgctagatatgtattttttttgtaaacaatttgttttgactgccatgatggattcacttgtctag
|||||| |||||| |  |||| |||||||| || || |||||||| || || || ||||||||||||||| ||||||| || |  ||||| || || | |||    || |  |   || |   |||   ||| ||| ||    ||      ||| ||  ||   | |      || ||||                                                                                  
CCACATCAAAGGGCTATTGATAAACTTCATTCATTCGTTCTGGCCATCACTGCTAAAAGTTCCATCTTTTATGGTTGAATTTACCACTCCTATAATAAGGgt----tagtagagttttgttgttatcatcatgtttatagaacttcatggttttcatattttgaattccctgtttctgcag---------------------------------------------------------------------------------

upper sequence: GRMZM2G021270_T01 (Zea mays), 5'ss of exon 7
lower sequence: PP1S33_203V6.1 (Physcomitrella patens), 5'ss of exon 9
CCACATTAAAGGGTTGCTGATCAACTTCATCCACTCATTCTGGCCGTCTCTTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAGgtagattactgtacgattttatctattgacatatttttatgtattttcaaattttattcttgatagtataccattttgcaccaaagggatttccccctgctagatatgtattttttttgtaaacaatttgttttgactgccatgatggattcacttgtctag
 || || ||||| ||| | |||||||||||||||||||||||||| ||  | || ||| ||||||| ||  | || |||||||| ||||||||| | ||||||  ||     | |  |||   | ||| |     ||   |  || | | | |   ||||     |||| |   | | | |  | |   |   | | |||                                                              
TCATATCAAAGGATTGTTAATCAACTTCATCCACTCATTCTGGCCCTCGTTGCTCAAAATTCCATCATTCCTCGTGGAGTTCATCACTCCAATCGTTAAGgtaagttgt--gatggatttggttgttgtc----cttggggccttgtgatactagcttct-----gtatgctcatct-cgctgatgacttcgacgcgtgcag------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18654823|gb|BM499628.1|BM499628
EST:     TTCTTAAAGTTCCATC-TTTTTGGTTGAGTTCATTACTCCAATCATCAAG                         GCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAA
genomic: TTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAGgtagattact ... acttgtctagGCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAA
EST: gi|18963118|gb|BM660250.1|BM660250
EST:     CCAA-CATCAA-                         GCAACCAGAGG-CAAACTACGAAATCA-TTTACACAATGCCAGAGTATGAA
genomic: CCAATCATCAAGgtagattact ... acttgtctagGCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAA
EST: gi|31354680|gb|CD439037.1|CD439037
EST:     CATCTTTTTTGGTTGAGTTCATTACTCCAATCACTCTAG                         GCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGA
genomic: CATCTTTTTTGGTTGAGTTCATTACTCCAATCA-TCAAGgtagattact ... acttgtctagGCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGA
EST: gi|18655210|gb|BM500015.1|BM500015
EST:     TTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAG                         GCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAA
genomic: TTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAGgtagattact ... acttgtctagGCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAA
EST: gi|18662206|gb|BM501800.1|BM501800
EST:     TTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAG                         GCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAA
genomic: TTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAGgtagattact ... acttgtctagGCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAA
EST: gi|18661837|gb|BM501604.1|BM501604
EST:     TTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAG                         GCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAA
genomic: TTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAGgtagattact ... acttgtctagGCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAA