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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGGCCCTGCTGGACCTTCTGGCAATGTTGCAAATTACATGGGACAAATGGCGATGGCTATGGGAAAACTTGGCACCCTAGAGAACTTTCTACGACAGgtttgtcatgcaaaatcacggacttgctcatttcataacagtgtgttatctttattttccttaacttgctgttactctttgaggtcttttatgtagacta...

Basic information

species Zea mays
transcript GRMZM2G019907_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019907_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g59350.2 (Oryza sativa), 5'ss of exon 10
CCTGGGCCCTGCTGGACCTTCTGGCAATGTTGCAAATTACATGGGACAAATGGCGATGGCTATGGGAAAACTTGGCACCCTAGAGAACTTTCTACGACAGgtttgtcatgcaaaatcacggacttgctcatttcataac--agtgtgttatctttattttccttaacttgctgttactctttgaggtcttttatgtagacta---
 || |||||||| ||| ||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| ||||| |||||   |  |      |  |  || | || |||| |||||   || ||||   |  || ||  |  | ||| | |      |  |  |   | ||| |   ||   
TCTCGGCCCTGCAGGATCTTCTGGTAATGTTGCAAACTACATGGGACAAATGGCAATGGCTATGGGGAAACTTGGTACCCTAGAAAACTTCCTACGGCAGgtaacttgtat----ttgcttacctcct-attttataacctggtttgtttgttcaatattgttcgagttggtttgtgcaatctatttggctcatgcattgtactt

upper sequence: GRMZM2G019907_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA20G39050.1 (Glycine max), 5'ss of exon 11
CCTGGGCCCTGCTGGACCTTCTGGCAATGTTGCAAATTACATGGGACAAATGGCGATGGCTATGGGAAAACTTGGCACCCTAGAGAACTTTCTACGACAGgtttgtcatgcaaaatcac--ggacttgctcatttcataacagtgtgttatctttattttccttaacttgctgttactctttg-aggtcttttatgtagacta----------------------------------------------------
 || ||| |  ||||  | || |||||||| |||||||||||||| |||||||| ||||| ||||| ||||| || || || |||   ||  |    |||||      | |  | ||||  | ||  | ||| ||     || | |  |      |  | |  |  | | | |    || | | || |  || || |  |  |                                                    
ACTTGGCTCCTCTGGTTCATCAGGCAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGGTTCATTAAGCAGgtaaacttttcttactcacatgtacgcgatcagtttggttcatttttctcaaagaaaatgctctttcatacagcatttcatggcagattattgatatcaaacatcactattaaaataacttagctctgttcatttttgtggtggtcatttgaaag

upper sequence: GRMZM2G019907_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA10G44270.1 (Glycine max), 5'ss of exon 9
CCTGGGCCCTGCTGGACCTTCTGGCAATGTTGCAAATTACATGGGACAAATGGCGATGGCTATGGGAAAACTTGGCACCCTAGAGAACTTTCTACGACAGgtttgtcatgcaaaatcacggacttgc--tcatttcataacagtgtgttatctttattttccttaacttgctgttactctttg-aggtcttttatgtagacta-------------------------------------------------
 || ||| |  ||||  | || |||||||| |||||||||||||| |||||||| ||||| ||||| ||||| || || || |||   ||  |    ||||| ||   | |  | ||||     |||  ||| ||    |||   |  |      |  | |  |  | | | |    || | | || |  || ||    |  |                                                 
ACTTGGCTCCTCTGGTTCATCAGGCAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAGgtatgcttttcttactcacatgtgtgcgatcagtttggtacatatttctcaaagaaaatgctctttcatacagcatttcatggcagattattgataacaaacatcactattaaaataacttggctctgtttatttttgtggtcatttgaaag

upper sequence: GRMZM2G019907_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA03G28320.1 (Glycine max), 5'ss of exon 11
CCTGGGCCCTGCTGGACCTTCTGGCAATGTTGCAAATTACATGGGACAAATGGCGATGGCTATGGGAAAACTTGGCACCCTAGAGAACTTTCTACGACAGgtttg-tcatgcaaaatcacggacttgctcatttcataacagtgtgtt--atctttattttccttaacttgctgttactctttgaggtcttttatgtagacta
 |   || |  | ||  | || || ||||| |||||||||||||| |||||||| ||||| |||||||| ||||| || || |||   ||||| |  |||||  | ||||               || |   |  |   |  | | ||  |  |  |     || |    ||| | | |  |    || |  | | ||     
GCCCAGCTCATCAGGCTCCTCGGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGgtacgctcattttccggtctaattctgttttctcaacttccatctttttgaaataaagagaactcaggaagctttgaattatctgagtttaatttatatg---

upper sequence: GRMZM2G019907_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA15G37220.1 (Glycine max), 5'ss of exon 7
CCTGGGCCCTGCTGGACCTTCTGGCAATGTTGCAAATTACATGGGACAAATGGCGATGGCTATGGGAAAACTTGGCACCCTAGAGAACTTTCTACGACAGgtttgtcatgcaaaatcacggacttgctcatttcataacagtgtgttatctttattttccttaacttgctgttactctttgaggtcttttatg-tagacta--------
 |  | | |  ||||  | || || ||||| |||||||||||||| |||||||| ||||| ||||| || || || || || ||    ||  | | ||||||   |  | |    |  |  |||||   |      || ||| || ||  ||  |      ||| |       | ||||| ||  |     || |   |||        
ACCTGCCTCATCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCCATGGCCATGGGTAAGCTAGGGACACTTGAAGGGTTCATTCAACAGgtacttttttctttgttgc--acttgtataca----aatagtttgctacattggtg---aataagtgaagaagaatcttttagtccagccttgatttcctaatattatt

upper sequence: GRMZM2G019907_T01 (Zea mays), 5'ss of exon 6
lower sequence: EFJ18699 (Selaginella moellendorffii), 5'ss of exon 2
CCTGGGCCCTGCTGGACCTTCTGGCAATGTTGCAAATTACATGGGACAAATGGCGATGGCTATGGGAAAACTTGGCACCCTAGAGAACTTTCTACGACAGgtttgtcatgcaaaatcacggacttgctcatttcataacagtgtgttatctttattttccttaacttgctgttactctttgaggtcttttatgtagacta
    ||| ||   |||   ||   ||| || || || ||||||||||||||||| ||||| |||||||| || || || || ||||||||| | || |||||     | || |   | ||  ||| ||   |   | | | |   ||  |                                                  
TGCCGGCTCTCTGGGAAACTCCCCCAACGTAGCGAACTACATGGGACAAATGGCCATGGCAATGGGAAAGCTCGGAACTCTCGAGAACTTTGTTCGCCAGgt----aacgcgag-ccgcgatctttctttctcgctgataattctttggcgcag----------------------------------------------

upper sequence: GRMZM2G019907_T01 (Zea mays), 5'ss of exon 6
lower sequence: EFJ28227 (Selaginella moellendorffii), 5'ss of exon 7
-CCTGGGCCCTGCTGGACCTTCTGGC-AATGTTGCAAATTACATGGGACAAATGGCGATGGCTATGGGAAAACTTGGCACCCTAGAGAACTTTCTACGACAGgtttgtcatgcaaaatcacggacttgctcatttcataacagtgtgttatctttattttccttaacttgctgttactctttgaggtcttttatgtagacta
  ||||  |||  ||| |  |  | | ||||| || || || |||||||||||||||||||| |||||||| || || || || |||||||||         ||| | || |  |  | | | |  || |  |||||  |     |||| |||  | |||||||  ||  | |                             
GACTGGCTCCT--TGGGCGCTGCGTCGAATGTCGCCAACTATATGGGACAAATGGCGATGGCGATGGGAAAGCTGGGAACGCTCGAGAACTTT---------GTTCGCCAGgtgatgtgatgtatctg-tggtttcacgat----tgttgtctcaactttcctt--ctaccag-----------------------------

upper sequence: GRMZM2G019907_T01 (Zea mays), 5'ss of exon 6
lower sequence: EFJ29724 (Selaginella moellendorffii), 5'ss of exon 7
-CCTGGGCCCTGCTGGACCTTCTGGC-AATGTTGCAAATTACATGGGACAAATGGCGATGGCTATGGGAAAACTTGGCACCCTAGAGAACTTTCTACGACAGgtttgtcatgcaaaatcacggacttgctcatttcataacagtgtgttatctttattttccttaacttgctgttactctttgaggtcttttatgtagacta
  ||||  |||  ||| |  |  | | ||||| || || || |||||||||||||||||||| |||||||| || || || || |||||||||         ||| | || |  |  | | | |  || |  |||||  |     ||||||||  | |||||||  ||  | |                             
GACTGGCTCCT--TGGGCGCTGCGTCGAATGTCGCCAACTATATGGGACAAATGGCGATGGCGATGGGAAAGCTGGGAACGCTCGAGAACTTT---------GTTCGCCAGgtgatgtgatgtatctg-tggtttcaccat----tgttatctcaactttcctt--ctaccag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32789988|gb|CD942224.1|CD942224
EST:     TGGCGATGGCTATGGGAAAACTTGGCACCCTAGAGAACTTTCTACGACAG                         GCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATCTTA
genomic: TGGCGATGGCTATGGGAAAACTTGGCACCCTAGAGAACTTTCTACGACAGgtttgtcatg ... tcgtctgcagGCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATCTTA