Sequence
atgc intronic sequence ATGC exonic sequenceGTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCATTGAAATTGCTGAAGAATTCTATGGAAGGTTTGttcatttttcgtgcctttctgtttggttataatcattttgatctggaaaactaacatttattctttttttgttatatgctgcatgtttgtgagcagagtgaaggtaacactgcatttgcgtgacttataagcctgcaataggaacatggatagttttttaatggaaatgcttgtttcttc
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G019361_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 5'ss of exon 7
GTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCATTGAAATTGCTGAAGAATTCTATGGAAGGTTTGttcat-ttttcgtgcctttctgtttggttataatcattttgatctggaaaactaacatttattctttttttgttatatgctgcatgtttgtgagcagagtgaaggtaacactgcatttgcgtgacttataagcctgcaataggaacatggatagttttttaatggaaatgcttgtttcttc
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GTGCGTGAAGCTGATATATCTAGGCTCTCATTTGCTGTTGAGATTGCAGAAGAATTCTATGGAAGgtttgtttgcctctttgtattttcatttgcagtttgctcctttcttatc------actaacaattttcctgaaaattttg-atg-tgcatcatggtgagcag------------------------------------------------------------------------------------
upper sequence: GRMZM2G019361_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 7
GTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCATTGAAATTGCTGAAGAATTCTATGGAAGGTTTGttcattttt--cgtgcctttctgtttggtt----ataatcattttgatctg-gaaaactaacatttattctttttttgttatatgctgcatgtttgtgagcagagtgaaggtaacactgcatttgcgtgacttataagcctgcaataggaacatggatagttttttaatggaaatgcttgtttcttc
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ATCCGTGAAGCTGATATTTCTCGGCTCTCCTTTGCTGTTGAGCTTGCGGAAGAATTTTATGGAAGgtttgcccaattgtactctgcatttctgtcttgtttaatatgattgcctgcctctatgaatactgac--tgggttctgtttgattggctcatgcaactcaattgacag------------------------------------------------------------------------------------
upper sequence: GRMZM2G019361_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 7
GTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCATTGAAATTGCTGAAGAATTCTATGGAAGGTTTGttcatttttcgtgcctttctgtttggttataatcattttgatctggaaaactaacatttattctttttttgttatatgctgcatgtttgtgagcagagtgaaggta----acactgcatttgcgtgacttataagcctgcaataggaacatggatagttttttaatggaaatgcttgtttcttc
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ATTCGTGAAGCCGACATTTCTCGATTATCATTTGCTGTTGAGCTTGCTGAAGAATTCTATGGAAGgttgctaaatttcaattatgttaccgt---------attttgtagaccagtcaagttattttcaaatattgcttctttatgcaccatttttttattgccatcactaatttgtttcacattgtgtcttcaaatgttatgtggca--aatag---------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31361636|gb|CD445993.1|CD445993EST: GGCTTTCATTTGCCATTGAAATTGCTGAAGAATTCTATGGAAGAGT--G
genomic: GGCTTTCATTTGCCATTGAAATTGCTGAAGAATTCTATGGAAG-GTTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCATTGAAATTGCTGAAGAATTCTATGGAAGGTTTGttcatttttcgtgcctttctgtttggttataatcattttgatctggaaaactaacatttattctttttttgttatatgctgcatgtttgtgagcagagtgaaggtaacactgcatttgcgtgacttataagcctgcaataggaacatggatagttttttaatggaaatgcttgtttcttc
- - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG