1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATCGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaaacactgctagtactgttctttcgcttccattcaatcttactgctgagaagctcgatttgtgcaatggcaccacag
species | Zea mays |
transcript | GRMZM2G017941_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|71329488|gb|DR801466.1|DR801466
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|211169629|gb|FL169502.1|FL169502
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|60401365|gb|DN234172.1|DN234172
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|7242261|gb|AW574447.1|AW574447
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCGCGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|110524419|gb|EE028603.1|EE028603
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: TTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|16379938|gb|BI993223.1|BI993223
genomic: TTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|37383723|gb|CF628888.1|CF628888
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: GCGGCGGGTTCGAGAAG-TANGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|31358873|gb|CD443230.1|CD443230
genomic: GCGGCGGGTTCGAGAAGTTA-GGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|93281025|gb|EB673289.1|EB673289
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|13515990|gb|BG518266.1|BG518266
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCCCCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGCCTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|71329487|gb|DR801465.1|DR801465
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|37379701|gb|CF626599.1|CF626599
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|4834965|gb|AI670191.1|AI670191
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: TTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|78106618|gb|DV525036.1|DV525036
genomic: TTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|101399852|gb|EB821772.1|EB821772
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|211172988|gb|FL169531.1|FL169531
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: GTCTTCTGCAGCGGCGGGTTCGAGAAAGT-AGGCACCACGGAATCGGAAG GGGAGCTGCTTTTCCCAGCT-GTCGACCTGCTGAAGCTGTCTGGGGCTAGAEST: gi|149013783|gb|EE043247.2|EE043247
genomic: GTCTTCTGCAGCGGCGGGTTCGAGAA-GTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTT-CCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGA
EST: CGTCTTCTGCAGCGGCGGGTTGGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|211172990|gb|FL169533.1|FL169533
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|67024634|gb|CO453383.1|CO453383
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|78106617|gb|DV525035.1|DV525035
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|4730421|gb|AI649587.1|AI649587
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: GGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGACEST: gi|148982778|gb|EE028604.2|EE028604
genomic: GGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTEST: gi|37397410|gb|CF636002.1|CF636002
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGT
EST: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAG GGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
genomic: CGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaa ... ggcaccacagGGGAGCTGCTTTCCCAGCTTGTCGACTTGCTGAAGCTGTCTGGGGCTAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTTGGTAGTGTCAGGAAGAACCAACCCGAGTGGACAGACTGATGTAATCGTCTTCTGCAGCGGCGGGTTCGAGAAGTTAGGCACCACGGAATCGGAAGgttaggcgaaacactgctagtactgttctttcgcttccattcaatcttactgctgagaagctcgatttgtgcaatggcaccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT