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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAGgtaactgctgaccttgttcatatcggtttctttgttttgtagtcagttttgctgtgcagagttactcttctggtttgcctaattttaaaggaaaaaaaactttacag

Basic information

species Zea mays
transcript GRMZM2G017853_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017853_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g26920.2 (Oryza sativa), 5'ss of exon 7
GATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAGgtaactgctgaccttgt--tcatatcggtttctttgttttgta-gtcagttttgctgtg---cagagttactcttctggtttgcctaattt-taaaggaaaaaaaactttacag-----------
|||||||| ||||||||  | || || |||||||||||||   || ||||||| ||| |||| |||||||| ||||| |||||||||| | ||||   ||  |  |  |  |   || |||||||  || |||   || ||||||   ||    | | ||  | | |   |   | | | ||   ||| ||| |||||             
GATGCTGCTTCCCTTGCAATTGCCATAATGAAAAAGGGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGgtcagtgctaggctacttgttttgactaattatttgtttcctacgtccacttagctgtgtatcatgactgcactaatagctgaacgggtctgtcaactgaaacaaaatttacttcaacttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74233405|gb|DT641319.1|DT641319
EST:     GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAG                         GCAAGAAATAATGGATG
genomic: GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAGgtaactgctg ... aactttacagGCAAGAAATAATGGATG
EST: gi|211291636|gb|FL460652.1|FL460652
EST:     GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAG                         GCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
genomic: GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAGgtaactgctg ... aactttacagGCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
EST: gi|18177348|gb|BM378558.1|BM378558
EST:     GGACTGCGGAGTCGAATATTTATGGGCTGTGACAACAAGCCCCTTTCCAG                         GCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
genomic: GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAGgtaactgctg ... aactttacagGCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
EST: gi|76927174|gb|DV171165.1|DV171165
EST:     GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAG                         GCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
genomic: GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAGgtaactgctg ... aactttacagGCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
EST: gi|71310881|gb|DR791743.1|DR791743
EST:     GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAG                         GCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
genomic: GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAGgtaactgctg ... aactttacagGCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
EST: gi|78089273|gb|DV517647.1|DV517647
EST:     GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAG                         GCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
genomic: GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAGgtaactgctg ... aactttacagGCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
EST: gi|71308383|gb|DR790420.1|DR790420
EST:     CGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAG                         GCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
genomic: CGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAGgtaactgctg ... aactttacagGCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
EST: gi|74233404|gb|DT641318.1|DT641318
EST:     GGACTGCGGAGTCGAATATTTTTGGGTTGTGACAACAAGCCCCTTTCCAG                         GCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
genomic: GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAGgtaactgctg ... aactttacagGCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
EST: gi|211289510|gb|FL460651.1|FL460651
EST:     GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAACCCCCTTTCCAG                         GCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
genomic: GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAGgtaactgctg ... aactttacagGCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
EST: gi|76927172|gb|DV171164.1|DV171164
EST:     GGACTGCGGAGTGGAATATTTTTGGGTTGTGACAACAAGCCCCTTTCCAG                         GCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
genomic: GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAGgtaactgctg ... aactttacagGCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
EST: gi|91051135|gb|EB161553.1|EB161553
EST:     GGACTGGGGAGTGGAATATTTTTGGGTTGTGACAACAAGCCCCTTTCCAG                         GCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
genomic: GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAGgtaactgctg ... aactttacagGCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
EST: gi|71764490|gb|DR962427.1|DR962427
EST:     GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAG                         GCAAGAAATAATGGATGCT
genomic: GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAGgtaactgctg ... aactttacagGCAAGAAATAATGGATGCT
EST: gi|78085441|gb|DV513834.1|DV513834
EST:     GGAATGGGGAGTGGAATATTTTTGGGTTGTGACAACAAGCCCCTTTCCAG                         GCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT
genomic: GGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAGgtaactgctg ... aactttacagGCAAGAAATAATGGATGCTGTTAACAATAGTGGAAAATTTGACACGAAGTT