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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGCTTGTTTTGCCGTTATTTAAAGCTACTGGTAATATCCTACTGCAAATCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaaggcctcaggtagtcgttcatttggttcaaaaagaaaatgcacttaagacgcatgagcaagtgatagatattctccag

Basic information

species Zea mays
transcript GRMZM2G017365_T09
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017365_T09 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g58580.1 (Oryza sativa), 5'ss of exon 7
TATGCTTGTTTTGCCGTTATTTAAAGCTACTGGTAATATCCTACTGCAAATCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaa--acaaggcctcaggtagtcgttcatttggttca-----aaaag---aaaatgcacttaagacgcatgagcaagtg--atagatattctccag
 ||||||||||||||  | ||||| ||||||||||||||||| |||||||| |||||  |||||||||||||||||||  |||| |||||||  |||||||||   ||| ||  |    | |    | |||  |||||       |||   |||      || ||||   |  | | ||    ||  |  || ||||
CATGCTTGTTTTGCCACTCTTTAAGGCTACTGGTAATATCCTTCTGCAAATTGCACCAGGCAATGTGCCACCTTCAGCTCTTACCAAGTGCTTCAGACAGgtaggtacacggtttggttttgcatattattcagttcattttggcaagcccaaagcttctttgagacatttccgtatgtattgtatttgctcaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76014355|gb|DT941525.1|DT941525
EST:     TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAG                         ATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
genomic: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaagg ... tattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
EST: gi|211384669|gb|FL388814.1|FL388814
EST:     TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAG                         ATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
genomic: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaagg ... tattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
EST: gi|9953706|gb|BE640289.1|BE640289
EST:     TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAG                         ATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
genomic: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaagg ... tattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
EST: gi|32796253|gb|CD948489.1|CD948489
EST:     CCACCTTCAGCCTTTACAAAGTGCTCGAGACAG                         ATTGCTGCTTGTGAGGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
genomic: CCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaagg ... tattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
EST: gi|166498606|gb|EG162706.1|EG162706
EST:     TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAG                         ATTGCTGCTTGTGAAG
genomic: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaagg ... tattctccagATTGCTGCTTGTGAAG
EST: gi|211489499|gb|FL457182.1|FL457182
EST:     TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAG                         ATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
genomic: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaagg ... tattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
EST: gi|71442151|gb|DR823201.1|DR823201
EST:     TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAG                         ATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
genomic: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaagg ... tattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
EST: gi|211206137|gb|FL466217.1|FL466217
EST:     TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAG                         ATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
genomic: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaagg ... tattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG