1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATATGGGATCTTGCATCAGGAACCCTGAAGCTTACACTGACTGGTCATATTGAGCAAATTCGTGgtaagtttttctttgtttttgtgagcaggatctactcaacatccacgctaagatttgtgccccactgtaaaactttagtaactgatgaatgttctgcacattactatag
species | Zea mays |
transcript | GRMZM2G017089_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATCAGGAACCCTGAAGCTTACACTGACTGGTCATATTGAGCAAATTCGTG GACTTGCTGTCAGCCAACGTCACACTTATTTATTTTCTGCTGGTGATGACAEST: gi|6021220|gb|AW066148.1|AW066148
genomic: ATCAGGAACCCTGAAGCTTACACTGACTGGTCATATTGAGCAAATTCGTGgtaagttttt ... attactatagGACTTGCTGTCAGCCAACGTCACACTTATTTATTTTCTGCTGGTGATGACA
EST: ATCAGGAACCCTGAAGCTTACACTGACTGGTCATATTGAGCAAATTCGTG GACTTGCTGTCAGCCAACGTCACACTTATTTATTTTCTGCTGGTGATGACAEST: gi|32933221|gb|CF038033.1|CF038033
genomic: ATCAGGAACCCTGAAGCTTACACTGACTGGTCATATTGAGCAAATTCGTGgtaagttttt ... attactatagGACTTGCTGTCAGCCAACGTCACACTTATTTATTTTCTGCTGGTGATGACA
EST: ATCAGGAACCCTGAAGCTTACACTGACTGGTCATATTGAGCAAATTCGTG GACTTGCTGTCAGCCAACGTCACACTTATTTATTTTCTGCTGGTGATGACAEST: gi|148962621|gb|EE013511.2|EE013511
genomic: ATCAGGAACCCTGAAGCTTACACTGACTGGTCATATTGAGCAAATTCGTGgtaagttttt ... attactatagGACTTGCTGTCAGCCAACGTCACACTTATTTATTTTCTGCTGGTGATGACA
EST: ATCAGGAACCCTGAAGCTTACACTGACTGGCCATATTGAGCAAATTCGTG GACTTGCTGTCAGCCAACGTCACACTTATTTATT
genomic: ATCAGGAACCCTGAAGCTTACACTGACTGGTCATATTGAGCAAATTCGTGgtaagttttt ... attactatagGACTTGCTGTCAGCCAACGTCACACTTATTTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATGGGATCTTGCATCAGGAACCCTGAAGCTTACACTGACTGGTCATATTGAGCAAATTCGTGgtaagtttttctttgtttttgtgagcaggatctactcaacatccacgctaagatttgtgccccactgtaaaactttagtaactgatgaatgttctgcacattactatag
- - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - TGAAGC