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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTGgtgagcacagcatccatccagtgccagcaatatattctttatcttttgacaacgcatcgttatctgtgcagaaattactcatgctgcttgcagaacgttaaaatattctctttgtttttttag

Basic information

species Zea mays
transcript GRMZM2G015869_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015869_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g18110.1 (Oryza sativa), 5'ss of exon 7
ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTGgtgagcacagcatccatccagtgccagcaatatattctttatc----------ttttgacaacgcatcgttatctgtgc--------------agaaattactcatgctgcttgcagaac-------gttaaaatat--tctctttgtttttttag
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ACACGCTAGTGAACTTCTATGGAAATATTGGGAAAACCCTTCTTTCATTGgtgagca--ggacttgttttactctaataatactatctttaccacttaaggatttctaactacaagcccttctcaatgttaaataataataataagaacaactcttaatgtttgctaaactcgagtaactaaaatgacatgtctttgatattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60338746|gb|DN205719.1|DN205719
EST:     ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG                         GAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
genomic: ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTGgtgagcacag ... gtttttttagGAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
EST: gi|78092412|gb|DV520786.1|DV520786
EST:     ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG                         GAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
genomic: ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTGgtgagcacag ... gtttttttagGAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
EST: gi|166698057|gb|EG194972.1|EG194972
EST:     TAACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG                         GAGACGGTTTTCTT
genomic: T-ACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTGgtgagcacag ... gtttttttagGAGACGGTTTTCTT
EST: gi|78084914|gb|DV513307.1|DV513307
EST:     ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG                         GAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
genomic: ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTGgtgagcacag ... gtttttttagGAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
EST: gi|5932718|gb|AW057079.1|AW057079
EST:     ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG                         GAGACGGTTTTCTTTGATGTCCTGGTCATTATCCAACACTACGTGTTGGAC
genomic: ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTGgtgagcacag ... gtttttttagGAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
EST: gi|50323027|gb|CO518153.1|CO518153
EST:     ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG                         GAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
genomic: ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTGgtgagcacag ... gtttttttagGAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
EST: gi|84977496|gb|DW475918.1|DW475918
EST:     GGAAAACCCTTCTTTCATTG                         GAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
genomic: GGAAAACCCTTCTTTCATTGgtgagcacag ... gtttttttagGAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
EST: gi|78081909|gb|DV510321.1|DV510321
EST:     ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG                         GAGACGGNNNNNNNNGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
genomic: ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTGgtgagcacag ... gtttttttagGAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
EST: gi|211091569|gb|FL457271.1|FL457271
EST:     ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG                         GAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
genomic: ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTGgtgagcacag ... gtttttttagGAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
EST: gi|50329143|gb|CO524269.1|CO524269
EST:     ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG                         GAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
genomic: ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTGgtgagcacag ... gtttttttagGAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
EST: gi|14244729|gb|BG842667.2|BG842667
EST:     ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG                         GAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTG-TGTAC
genomic: ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTGgtgagcacag ... gtttttttagGAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
EST: gi|14208276|gb|BG841954.1|BG841954
EST:     ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG                         GAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTG-TGTAC
genomic: ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTGgtgagcacag ... gtttttttagGAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
EST: gi|5919428|gb|AW054525.1|AW054525
EST:     ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG                         GAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
genomic: ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTGgtgagcacag ... gtttttttagGAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
EST: gi|78084875|gb|DV513268.1|DV513268
EST:     ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG                         NAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
genomic: ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTGgtgagcacag ... gtttttttagGAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
EST: gi|213191208|gb|FM187518.1|FM187518
EST:     ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTG                         GAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC
genomic: ATACTTTGGTGAATTTCTATGGAAACATTGGGAAAACCCTTCTTTCATTGgtgagcacag ... gtttttttagGAGACGGTTTTCTTTGATGTCCTGTTCATTATCCAACACTACGTGTTGTAC