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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTTGCATTGTTGCGAAAAGGCTAGGGCATAGGCTCTCAGATAACCACTGGGAACTTAGGGACTTCTCTGCCAATTTGGTTGCCTTGGTATGTCAGAGgtgagtgatatgtgaagggtgtcagtaaatctttgtataattatcaaaatttaattcaattgcatttgtgatttcaattccttgattctcatattatgac...

Basic information

species Zea mays
transcript GRMZM2G013908_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013908_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g32750.1 (Oryza sativa), 5'ss of exon 8
TCACTTGCATTGTTGCGAAAAGGCTAGGGCATAGGCTCTCAGATAACCACTGGGAACTTAGGGACTTCTCTGCCAATTTGGTTGCCTTGGTATGTCAGAGgtgagtgatatgtgaagggtgtcagtaaatctttgtataattatcaaaatttaattcaattgcatttgtgatttcaattccttgattctcatattatgac---
|||| ||||| |||||||||||||| ||||||||||| ||||| ||||| ||||| ||||| ||||||||||| ||||||||||  |  |||||||  |||||||||| |   |||| ||  |     |  |   |||    |||  |||    ||||| |  |  | | ||    | |     ||    | |    |     
TCACCTGCATGGTTGCGAAAAGGCTTGGGCATAGGCTTTCAGACAACCATTGGGAGCTTAGAGACTTCTCTGCTAATTTGGTTGGTTCAGTATGTCGAAGgtgagtga-acacgaagagtaactactcaaatacctatg--catcgcaatgggcttcaaatagacatataataagtaataaaaaatatgaaaaaggcgtatat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18661346|gb|BM501365.1|BM501365
EST:     TGGGAACTTAGGGACTTCTCTGCCAATTTGGTTGCCTTGGTATGTCAGAG                         GTTTGGTCATGTCTATCACAACCTTCAAAATCGGTTAACTAAAACATTGAT
genomic: TGGGAACTTAGGGACTTCTCTGCCAATTTGGTTGCCTTGGTATGTCAGAGgtgagtgata ... atggtttcagGTTTGGTCATGTCTATCACAACCTTCAAAATCGGTTAACTAAAACATTGAT
EST: gi|26455852|gb|CA827435.1|CA827435
EST:     TGGGAACTTAGGGACTTCTCTGCCAATTTGGTTGCCTTGGTATGTCAGAG                         GTTTGGTCATGTCTATCACAACCTTCAAAATCGGTTAACTAAAACATTGAT
genomic: TGGGAACTTAGGGACTTCTCTGCCAATTTGGTTGCCTTGGTATGTCAGAGgtgagtgata ... atggtttcagGTTTGGTCATGTCTATCACAACCTTCAAAATCGGTTAACTAAAACATTGAT
EST: gi|19822284|gb|BQ048308.1|BQ048308
EST:     TGGGAACTTAGGGACTTCTCTGCCAATTTGGTTGCCTTGGTATGTCAGAG                         GTTTGGTCATGTCTATCACAACCTTCAAAATCGGTTAACTAAAACATTGAT
genomic: TGGGAACTTAGGGACTTCTCTGCCAATTTGGTTGCCTTGGTATGTCAGAGgtgagtgata ... atggtttcagGTTTGGTCATGTCTATCACAACCTTCAAAATCGGTTAACTAAAACATTGAT
EST: gi|60351712|gb|DN218685.1|DN218685
EST:     TGGGAACTTAGGGACTTCTCTGCCAATTTGGTTGCCTTGGTATGTCAGAG                         GTTTGGTCATGTCTATCACAACCTTCAAAATCGGTTAACTAAAACATTGAT
genomic: TGGGAACTTAGGGACTTCTCTGCCAATTTGGTTGCCTTGGTATGTCAGAGgtgagtgata ... atggtttcagGTTTGGTCATGTCTATCACAACCTTCAAAATCGGTTAACTAAAACATTGAT
EST: gi|211271502|gb|FL060904.1|FL060904
EST:     AATTTGGTTGCCTTGGTATGTCAGAG                         GTTTGGTCATGTCTATCACAACCTTCAAAATCGGTTAACTAAAACATTGAT
genomic: AATTTGGTTGCCTTGGTATGTCAGAGgtgagtgata ... atggtttcagGTTTGGTCATGTCTATCACAACCTTCAAAATCGGTTAACTAAAACATTGAT